Basic Information

Insect: Smittia aterrima
Gene Symbol: -
Assembly: GCA_033063855.1
Location: CP093831.1:27422553-27430153[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.18 7.4 7.2 0.1 1 23 520 543 520 543 0.94

2 12 0.0011 0.046 14.2 1.9 1 23 548 571 548 571 0.92

3 12 3.8 1.6e+02 3.0 0.2 1 23 994 1017 994 1017 0.89

4 12 0.55 23 5.7 2.2 1 23 1024 1047 1024 1047 0.87

5 12 0.0008 0.033 14.6 1.2 1 23 1056 1078 1056 1078 0.95

6 12 2.2 92 3.8 2.0 1 23 1083 1108 1083 1108 0.94

7 12 0.02 0.81 10.2 1.3 1 23 1114 1139 1114 1139 0.95

8 12 0.0022 0.091 13.2 0.1 1 23 1562 1585 1562 1585 0.94

9 12 0.011 0.44 11.1 2.7 1 21 1590 1610 1590 1613 0.90

10 12 0.0015 0.062 13.8 1.5 1 23 1622 1644 1622 1644 0.96

11 12 0.099 4.1 8.0 1.3 1 23 1680 1705 1680 1705 0.95

12 12 1.4 59 4.4 0.4 2 23 1710 1733 1710 1733 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.18	7.4	7.2	0.1	1	23	520	543	520	543	0.94
2	12	0.0011	0.046	14.2	1.9	1	23	548	571	548	571	0.92
3	12	3.8	1.6e+02	3.0	0.2	1	23	994	1017	994	1017	0.89
4	12	0.55	23	5.7	2.2	1	23	1024	1047	1024	1047	0.87
5	12	0.0008	0.033	14.6	1.2	1	23	1056	1078	1056	1078	0.95
6	12	2.2	92	3.8	2.0	1	23	1083	1108	1083	1108	0.94
7	12	0.02	0.81	10.2	1.3	1	23	1114	1139	1114	1139	0.95
8	12	0.0022	0.091	13.2	0.1	1	23	1562	1585	1562	1585	0.94
9	12	0.011	0.44	11.1	2.7	1	21	1590	1610	1590	1613	0.90
10	12	0.0015	0.062	13.8	1.5	1	23	1622	1644	1622	1644	0.96
11	12	0.099	4.1	8.0	1.3	1	23	1680	1705	1680	1705	0.95
12	12	1.4	59	4.4	0.4	2	23	1710	1733	1710	1733	0.96

Sequence Information

Coding Sequence: ATGGTCAAGACTTGTGAGTTGAGTGAACATCAGAGATTACTTGTTGTCAATCTTTCACGACAGGGTAAATCCCATCGGAAAATTCAAGCTGAAACAGGAATTGGAAAATCTACAGTATACAACATTCTCAAGAAGTTTAAAACATATGGAACAGTTAAAAATCTCCCGAGGACTGGACGAAAACGTGAATTCAGATTACCAGAGAAAACATTAAGCGAGataataaaaaggaaaaatggaAAGATTAGGAACTATTCACAAGAAGATTTACGAAATGCTCCGAAAGAAGTGCAAGAAGGATACAGCTGTAACTCAATAGGCAAAAAATATGGAATTCCTGAAGTCACTTTGCGTTCTCGTATTGCTGGTTGTGTAAATGGACGAGCTCTACAAACAGAAAAACCTAAAAGTAGTTGCAGACTTTGCCTTGAGCAGCTCGAGATTGAAACAGAAGCGAAATTAGTTGAACAAGATCTagagataaaaataaacgaaattttcccttcaaaCGTTCTCCGATTGCCGACAGCTTCAACAAATTCTCTCTGCATTCCCTGCTACGCCCAAGTGCAAGACTTTCATGACTTCAGATCAACGATCATCCAAAAGCACTTGAACTGCGAACAATTTGAACTTTGCGAGATTAAAATGgaacaaatcgatttcaatccTGTCGTCAACATTTTGgcaattaaagaagaagatttaggAGAATACGAATGGAACGCTGATGACTGGAACAATGAAGCTGATGCAGAAGTCAACGGTTTCGAGGATGTTTTGgaagaaattagaaaaggAGAAGTGCAAATTCATCAGTTACGAAACGATCTtgacaaagctttgaaagcaaTTGACAAGGGATCTTCTATCACCGACGCAGCATTGAAGTTTAACATTTCGGAATCACATTTAAAGGATTTTGCCGACAGATCGGCTTCACCTCTAGAATTTGATcggaaaattgcaaattggATCATAACTTCTGGCGAATTGTGTGATCCaaagacaaaacaaaatgttctcgATGCAGCAACTCATTTATCCAAACTCAACTCATCCACGAtctcaaatgaattcaatgacAACTGGTTCCGAAGTTTCCTAAAGAGAAATCCTGATGTGCTACTTCCAAAAGTATTGAGATTAGAATCAAACGTCGAGGAGCAAGCTGAAAACTTTGGAACAAAATCATTTACCGAGGAAACCATGAAACTTGCTTTggaggaaattgaaaacggTGCCACTGCCTATAAGACTGCaaagaaatacaaaattgttttacgAACGTTGAGTCGCAGacataaactttgtttcaagagaaaatcaaaagacCCACAAATTCCTCGCGCATTAGAGACGATACTTGCCGATTGGATCGTTGCTTGTAATGAATTGGGCGACACGAAGAAACATTCAAACATTTGTGAGATTGCTTCgcatttcatgaaaattcaaaaacgaAACCACTGTCCCGCTACTGTTAAAGACTGGGTCAATCGCTTCTTAAGACGACATCCTGagactttaattgaatctcTAAAggAATTAGCAAAGTTTGAATGCGATGTGTGTGGATATCAACAGACAAATCGATCTCTTATAAAAAATCACATCCTCGCTGTTCatgcaaagaagaagttcGAATGCAAAATCTGCGAAAAGTCTTTTACTACAATCAAGTGCCTTAGAGATCATGCACTTGAGCAACATCCTGCACctggagaagaaaagaactttgtttGTGAAGTTCTTCGATCGCCGACAGCTTCATCGAATTATCTCTGCATTCCCTGCTTTGCCCAAGTGGAAGACTTTCATCAATTCAGATCAACGATCATCAATAAACATTCGAACTGCGAACAATTTGAACTTTGCGAGATTAAAATGGAACAAATCGACTTTAATCCTGTCGTCAACATTTTGgcaattaaagaagaagaattagGAGATTACGAGTGGAACGCTGATGACTGGAACAATGAGCCTGATGCCGAAATGAACGCTGAATGTGATCAAAGAGAATTAGAAATTCCTCAATCGAAAAACGATTCTGATAACGTTTCGATAGAATTTGATCAAGGAGAATCAATAATTCCTCAGTCGGAAAACGATTTCGAGGAAGTTTTAgaagaaattagaaaaggAGAATTGCAAATTCATCAATTACAAATCGATCTtgacaaagctttgaaagcaaTCGACAAAGGATCTTCCATCACCGACGCAGCTTTAAAGTTCAACATTTCGGAATCACATTTGAAGGATTTTGGCGACAGTTCGGCTTCTCCTCAAGAATTTGATcggaaaattgcaaattggATCATAACTTCTGGCGAAATGTGTGATCCAAAgacgaaacaaaatgttctcgATGCTGCAACTCATTTATCCAAACTCGACTCATCCACGAtctcaaatgaattcaatgacAACTGGTTCCGAAGTTTTCTAAAGAGAAATCCTGATGTGCTTCTTCCAAATGTATTGAGTTTAGAATCAAACGCTGATGATACAACTGAGGATGTTCCAGACGACAAAGCTTCAGATAATTCAGAGAACGAAATTGATTGGATCAAAAAGCAATCTGAAAACTCTagaataaaatcattttccgaGGAAACGATGAAACTTGCATTGGAGGAAGTGAAAAACGGAGCAACTGTCTATTCGATTGCaaagaaatacaaaattgCGCATAGTACTTTAAGTGAAAGACTAAAATTTGGttgcaaaagaagaaagtcaaAGCAGCCACAAATTCCTATCGCATTAGAGACGAGACTTGCCGATTGGATCGTAGTTTGTAACGAACTGGGTGACACGAAGAATCATTCTAACATTTGTAAGATTGCATCgcatttcttgaaaattcaaaaacgaAAGCACTATCCCGCAGTTGTTGAAGATTGGGTTGATCGCTTCTTAAGACGACATCCTGAGACTTTAATTGAACCTTCGAAgCAATTAGAAAAGCGATTTGTGTGCGATTTGTGTGGATATCAACAgacaaaacgaaattatgTTAGAATTCACATCCTCGCTGTTCatgcaaagaaaaagttcgaatttaaatgcaaaatcTGCGAAAAGTCTTATCTTTCAATCCAgtgtttgaaaaatcatgCACTTGAGCAACATCCCGCGCCTGGAAAAGCAATGAACTTTGTTTGTGAAGTTTGTGCGAAAAGTTTCTACACAAAATCATCTTTTAACTCTCATTCTTTGCTTCataaggaaaagaaatttcattgcgatTTTGAAGGAtgcaacaagaaatttttatatGCAAACGAACTCGACAACCACAAACGCAATGATCACTACggaataaaagatttcaaatgtCAATTTCCTGGTTGCGACAAAGCTTACAAAGACAGACAAAAACAGATTCGACATCAAAAGGACTCACACGAGGAACGAGCGAAATGTCCAATCAACAATTGCACTTTTCGTgtTCTTCGATCGCCGACAGCTTCATCAAATTCTCTCTGCATTCCCTGCTACGCTCAAGTGCAAGACTTTCATCACTTCAGATCAACGATCatcaataaacatttgaacTGCGAACAATTTGAACTTTGCGAGATTAAAATGGAACAAATAGACTTCAATCCTGTCGTCAACATTTTGgcaataaaagaagaagatttaggAGATTACGAATGGAACGCAGATGACTGGAACAATGAAACCAACACTGAATGTGATCAACGAGAATTAGAAATTCCTCAACTTCCAAACGATTCTGATAACGTTTCGATTGAATCTGATCAAGAAGAATCAATAATTCCTCAGtcggaaaatgatttcgaggAAGTTTTAGAAGAAATTAGGAAAGGAGAATTGCAAATTCATCAATTACAAATCGATCTTGACAAAGCCTTGAAAGCAATTGATAAAGGATCTTCCATCACTGACGCAGcttcaaagttcaaaattTCGGAATCACATTTAAAGGATTTTGCCGACAAATCAAGTTCACCTCAAGAATTTGATcggaaaattgcaaattggATCAAAACTTCTGGCGAAATGTGTGATCCAAAgacgaaacaaaatgttctcgATGCTGCAACTCATTTATCCAAACTTGACTCATCCACGAtctcaaatgaattcaatgacAACTGGTTCCGAAGCTTTCTAAAGAGAAATCCTGATGTGCTTCTTCCAAATGTATTGAGATTAGAATCAGACGCTGATAAGACAACTGATGATCTTCCAGACgacaaagcttcaaataattCAGAGAACGAAACTGATTGGATCAAAAAGCAATCTGAAAACTttggaaaaaaatcatttaccGAGGAAACCATGAAACTTGCTTTGGAGGAAGTGAAAAACGGAGCAACTGTCTATTCGATTGCaaagaaatacaaaattgCGCAAAGTACTATACGTCGCAGATTAAAATTTGGTATCAatatcaaaagaagaaagtcaaACCAGCCACAAATTCCTTTCGCATTGGAGACGAGACTTGCCGATTGGATCGTTGCTTGTAATGAATTGGGCGACACGAAGAATCATTCCAACATTTGCGAGATTGTTTCGCATTTtataaaacttcaaaaacgAAAGCACTGTGCCGCAATTGTCAACACTTGGGTTGATCGCTTTCTAAGACGACATCCTGAGACTTTAATTGAACCTTCGAAgGAATTAAAAAAACGATTTGAGTGCGATGTGTGTGGATACCAATACTCGAATAAGTCTGTTGTAAGAAATCACATCCTCGCTCTCCatgcaaagaaaaagttcaaatgcAAAATTTGTGAGAAGATATTTACTTCAATCAAGTGTCTTAGAGATCATGCATTTGAGCAACATCCCGCGTCTGGAAAAGCccaaaactttgtttgtgaAGTTTGTGCAAAAAGTTTCTACACATGGAAAGCTCTTCACACACATTCTAAGCTTCacaaggaaaagaaatttcattgcgatTTTGAAGGATGcgtcaagaaatttttatttgcaaaagaACTCGATGATCACAAGCGCAGTGATCACTACggaataaaagatttcaaatgtCAATTTGCTGGTTGCGACAAAGCTTACAACTCCAAACAAAGACAGATTCGACATCAAAAGGACTCACACGAGGAACGAGCGAAATGTCCAATCAACAATTGCAGTTTTCGTGTTGGTCGCGCTGCTTAcatgagaaatcatttgaagcgACACACAGATATTGATGATCAAGAGCTGCaggaatatttattgattgttaagaaaatgaaattgtcaaCTTGA
Protein Sequence: MVKTCELSEHQRLLVVNLSRQGKSHRKIQAETGIGKSTVYNILKKFKTYGTVKNLPRTGRKREFRLPEKTLSEIIKRKNGKIRNYSQEDLRNAPKEVQEGYSCNSIGKKYGIPEVTLRSRIAGCVNGRALQTEKPKSSCRLCLEQLEIETEAKLVEQDLEIKINEIFPSNVLRLPTASTNSLCIPCYAQVQDFHDFRSTIIQKHLNCEQFELCEIKMEQIDFNPVVNILAIKEEDLGEYEWNADDWNNEADAEVNGFEDVLEEIRKGEVQIHQLRNDLDKALKAIDKGSSITDAALKFNISESHLKDFADRSASPLEFDRKIANWIITSGELCDPKTKQNVLDAATHLSKLNSSTISNEFNDNWFRSFLKRNPDVLLPKVLRLESNVEEQAENFGTKSFTEETMKLALEEIENGATAYKTAKKYKIVLRTLSRRHKLCFKRKSKDPQIPRALETILADWIVACNELGDTKKHSNICEIASHFMKIQKRNHCPATVKDWVNRFLRRHPETLIESLKELAKFECDVCGYQQTNRSLIKNHILAVHAKKKFECKICEKSFTTIKCLRDHALEQHPAPGEEKNFVCEVLRSPTASSNYLCIPCFAQVEDFHQFRSTIINKHSNCEQFELCEIKMEQIDFNPVVNILAIKEEELGDYEWNADDWNNEPDAEMNAECDQRELEIPQSKNDSDNVSIEFDQGESIIPQSENDFEEVLEEIRKGELQIHQLQIDLDKALKAIDKGSSITDAALKFNISESHLKDFGDSSASPQEFDRKIANWIITSGEMCDPKTKQNVLDAATHLSKLDSSTISNEFNDNWFRSFLKRNPDVLLPNVLSLESNADDTTEDVPDDKASDNSENEIDWIKKQSENSRIKSFSEETMKLALEEVKNGATVYSIAKKYKIAHSTLSERLKFGCKRRKSKQPQIPIALETRLADWIVVCNELGDTKNHSNICKIASHFLKIQKRKHYPAVVEDWVDRFLRRHPETLIEPSKQLEKRFVCDLCGYQQTKRNYVRIHILAVHAKKKFEFKCKICEKSYLSIQCLKNHALEQHPAPGKAMNFVCEVCAKSFYTKSSFNSHSLLHKEKKFHCDFEGCNKKFLYANELDNHKRNDHYGIKDFKCQFPGCDKAYKDRQKQIRHQKDSHEERAKCPINNCTFRVLRSPTASSNSLCIPCYAQVQDFHHFRSTIINKHLNCEQFELCEIKMEQIDFNPVVNILAIKEEDLGDYEWNADDWNNETNTECDQRELEIPQLPNDSDNVSIESDQEESIIPQSENDFEEVLEEIRKGELQIHQLQIDLDKALKAIDKGSSITDAASKFKISESHLKDFADKSSSPQEFDRKIANWIKTSGEMCDPKTKQNVLDAATHLSKLDSSTISNEFNDNWFRSFLKRNPDVLLPNVLRLESDADKTTDDLPDDKASNNSENETDWIKKQSENFGKKSFTEETMKLALEEVKNGATVYSIAKKYKIAQSTIRRRLKFGINIKRRKSNQPQIPFALETRLADWIVACNELGDTKNHSNICEIVSHFIKLQKRKHCAAIVNTWVDRFLRRHPETLIEPSKELKKRFECDVCGYQYSNKSVVRNHILALHAKKKFKCKICEKIFTSIKCLRDHAFEQHPASGKAQNFVCEVCAKSFYTWKALHTHSKLHKEKKFHCDFEGCVKKFLFAKELDDHKRSDHYGIKDFKCQFAGCDKAYNSKQRQIRHQKDSHEERAKCPINNCSFRVGRAAYMRNHLKRHTDIDDQELQEYLLIVKKMKLST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01352554;
90% Identity: iTF_01352554;
80% Identity: iTF_01352554;