Basic Information

Insect: Smittia aterrima
Gene Symbol: -
Assembly: GCA_033063855.1
Location: CP093831.1:27422553-27430153[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 7.1 4.9e+03 -2.7 0.0 25 41 63 79 62 81 0.82

2 8 0.0028 2 8.2 0.0 3 37 88 121 86 125 0.86

3 8 0.0046 3.2 7.5 0.0 3 31 276 303 274 311 0.91

4 8 0.0018 1.2 8.8 0.1 1 37 400 436 400 437 0.92

5 8 0.012 8.4 6.2 0.0 4 31 726 752 726 756 0.93

6 8 1.2e-05 0.0082 15.8 0.0 1 38 872 908 872 913 0.92

7 8 0.01 7.3 6.4 0.0 4 31 1292 1318 1292 1323 0.92

8 8 3.8e-05 0.027 14.2 0.1 1 41 1438 1477 1438 1481 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	7.1	4.9e+03	-2.7	0.0	25	41	63	79	62	81	0.82
2	8	0.0028	2	8.2	0.0	3	37	88	121	86	125	0.86
3	8	0.0046	3.2	7.5	0.0	3	31	276	303	274	311	0.91
4	8	0.0018	1.2	8.8	0.1	1	37	400	436	400	437	0.92
5	8	0.012	8.4	6.2	0.0	4	31	726	752	726	756	0.93
6	8	1.2e-05	0.0082	15.8	0.0	1	38	872	908	872	913	0.92
7	8	0.01	7.3	6.4	0.0	4	31	1292	1318	1292	1323	0.92
8	8	3.8e-05	0.027	14.2	0.1	1	41	1438	1477	1438	1481	0.90

Sequence Information

Coding Sequence: ATGGTCAAGACTTGTGAGTTGAGTGAACATCAGAGATTACTTGTTGTCAATCTTTCACGACAGGGTAAATCCCATCGGAAAATTCAAGCTGAAACAGGAATTGGAAAATCTACAGTATACAACATTCTCAAGAAGTTTAAAACATATGGAACAGTTAAAAATCTCCCGAGGACTGGACGAAAACGTGAATTCAGATTACCAGAGAAAACATTAAGCGAGataataaaaaggaaaaatggaAAGATTAGGAACTATTCACAAGAAGATTTACGAAATGCTCCGAAAGAAGTGCAAGAAGGATACAGCTGTAACTCAATAGGCAAAAAATATGGAATTCCTGAAGTCACTTTGCGTTCTCGTATTGCTGGTTGTGTAAATGGACGAGCTCTACAAACAGAAAAACCTAAAAGTAGTTGCAGACTTTGCCTTGAGCAGCTCGAGATTGAAACAGAAGCGAAATTAGTTGAACAAGATCTagagataaaaataaacgaaattttcccttcaaaCGTTCTCCGATTGCCGACAGCTTCAACAAATTCTCTCTGCATTCCCTGCTACGCCCAAGTGCAAGACTTTCATGACTTCAGATCAACGATCATCCAAAAGCACTTGAACTGCGAACAATTTGAACTTTGCGAGATTAAAATGgaacaaatcgatttcaatccTGTCGTCAACATTTTGgcaattaaagaagaagatttaggAGAATACGAATGGAACGCTGATGACTGGAACAATGAAGCTGATGCAGAAGTCAACGGTTTCGAGGATGTTTTGgaagaaattagaaaaggAGAAGTGCAAATTCATCAGTTACGAAACGATCTtgacaaagctttgaaagcaaTTGACAAGGGATCTTCTATCACCGACGCAGCATTGAAGTTTAACATTTCGGAATCACATTTAAAGGATTTTGCCGACAGATCGGCTTCACCTCTAGAATTTGATcggaaaattgcaaattggATCATAACTTCTGGCGAATTGTGTGATCCaaagacaaaacaaaatgttctcgATGCAGCAACTCATTTATCCAAACTCAACTCATCCACGAtctcaaatgaattcaatgacAACTGGTTCCGAAGTTTCCTAAAGAGAAATCCTGATGTGCTACTTCCAAAAGTATTGAGATTAGAATCAAACGTCGAGGAGCAAGCTGAAAACTTTGGAACAAAATCATTTACCGAGGAAACCATGAAACTTGCTTTggaggaaattgaaaacggTGCCACTGCCTATAAGACTGCaaagaaatacaaaattgttttacgAACGTTGAGTCGCAGacataaactttgtttcaagagaaaatcaaaagacCCACAAATTCCTCGCGCATTAGAGACGATACTTGCCGATTGGATCGTTGCTTGTAATGAATTGGGCGACACGAAGAAACATTCAAACATTTGTGAGATTGCTTCgcatttcatgaaaattcaaaaacgaAACCACTGTCCCGCTACTGTTAAAGACTGGGTCAATCGCTTCTTAAGACGACATCCTGagactttaattgaatctcTAAAggAATTAGCAAAGTTTGAATGCGATGTGTGTGGATATCAACAGACAAATCGATCTCTTATAAAAAATCACATCCTCGCTGTTCatgcaaagaagaagttcGAATGCAAAATCTGCGAAAAGTCTTTTACTACAATCAAGTGCCTTAGAGATCATGCACTTGAGCAACATCCTGCACctggagaagaaaagaactttgtttGTGAAGTTCTTCGATCGCCGACAGCTTCATCGAATTATCTCTGCATTCCCTGCTTTGCCCAAGTGGAAGACTTTCATCAATTCAGATCAACGATCATCAATAAACATTCGAACTGCGAACAATTTGAACTTTGCGAGATTAAAATGGAACAAATCGACTTTAATCCTGTCGTCAACATTTTGgcaattaaagaagaagaattagGAGATTACGAGTGGAACGCTGATGACTGGAACAATGAGCCTGATGCCGAAATGAACGCTGAATGTGATCAAAGAGAATTAGAAATTCCTCAATCGAAAAACGATTCTGATAACGTTTCGATAGAATTTGATCAAGGAGAATCAATAATTCCTCAGTCGGAAAACGATTTCGAGGAAGTTTTAgaagaaattagaaaaggAGAATTGCAAATTCATCAATTACAAATCGATCTtgacaaagctttgaaagcaaTCGACAAAGGATCTTCCATCACCGACGCAGCTTTAAAGTTCAACATTTCGGAATCACATTTGAAGGATTTTGGCGACAGTTCGGCTTCTCCTCAAGAATTTGATcggaaaattgcaaattggATCATAACTTCTGGCGAAATGTGTGATCCAAAgacgaaacaaaatgttctcgATGCTGCAACTCATTTATCCAAACTCGACTCATCCACGAtctcaaatgaattcaatgacAACTGGTTCCGAAGTTTTCTAAAGAGAAATCCTGATGTGCTTCTTCCAAATGTATTGAGTTTAGAATCAAACGCTGATGATACAACTGAGGATGTTCCAGACGACAAAGCTTCAGATAATTCAGAGAACGAAATTGATTGGATCAAAAAGCAATCTGAAAACTCTagaataaaatcattttccgaGGAAACGATGAAACTTGCATTGGAGGAAGTGAAAAACGGAGCAACTGTCTATTCGATTGCaaagaaatacaaaattgCGCATAGTACTTTAAGTGAAAGACTAAAATTTGGttgcaaaagaagaaagtcaaAGCAGCCACAAATTCCTATCGCATTAGAGACGAGACTTGCCGATTGGATCGTAGTTTGTAACGAACTGGGTGACACGAAGAATCATTCTAACATTTGTAAGATTGCATCgcatttcttgaaaattcaaaaacgaAAGCACTATCCCGCAGTTGTTGAAGATTGGGTTGATCGCTTCTTAAGACGACATCCTGAGACTTTAATTGAACCTTCGAAgCAATTAGAAAAGCGATTTGTGTGCGATTTGTGTGGATATCAACAgacaaaacgaaattatgTTAGAATTCACATCCTCGCTGTTCatgcaaagaaaaagttcgaatttaaatgcaaaatcTGCGAAAAGTCTTATCTTTCAATCCAgtgtttgaaaaatcatgCACTTGAGCAACATCCCGCGCCTGGAAAAGCAATGAACTTTGTTTGTGAAGTTTGTGCGAAAAGTTTCTACACAAAATCATCTTTTAACTCTCATTCTTTGCTTCataaggaaaagaaatttcattgcgatTTTGAAGGAtgcaacaagaaatttttatatGCAAACGAACTCGACAACCACAAACGCAATGATCACTACggaataaaagatttcaaatgtCAATTTCCTGGTTGCGACAAAGCTTACAAAGACAGACAAAAACAGATTCGACATCAAAAGGACTCACACGAGGAACGAGCGAAATGTCCAATCAACAATTGCACTTTTCGTgtTCTTCGATCGCCGACAGCTTCATCAAATTCTCTCTGCATTCCCTGCTACGCTCAAGTGCAAGACTTTCATCACTTCAGATCAACGATCatcaataaacatttgaacTGCGAACAATTTGAACTTTGCGAGATTAAAATGGAACAAATAGACTTCAATCCTGTCGTCAACATTTTGgcaataaaagaagaagatttaggAGATTACGAATGGAACGCAGATGACTGGAACAATGAAACCAACACTGAATGTGATCAACGAGAATTAGAAATTCCTCAACTTCCAAACGATTCTGATAACGTTTCGATTGAATCTGATCAAGAAGAATCAATAATTCCTCAGtcggaaaatgatttcgaggAAGTTTTAGAAGAAATTAGGAAAGGAGAATTGCAAATTCATCAATTACAAATCGATCTTGACAAAGCCTTGAAAGCAATTGATAAAGGATCTTCCATCACTGACGCAGcttcaaagttcaaaattTCGGAATCACATTTAAAGGATTTTGCCGACAAATCAAGTTCACCTCAAGAATTTGATcggaaaattgcaaattggATCAAAACTTCTGGCGAAATGTGTGATCCAAAgacgaaacaaaatgttctcgATGCTGCAACTCATTTATCCAAACTTGACTCATCCACGAtctcaaatgaattcaatgacAACTGGTTCCGAAGCTTTCTAAAGAGAAATCCTGATGTGCTTCTTCCAAATGTATTGAGATTAGAATCAGACGCTGATAAGACAACTGATGATCTTCCAGACgacaaagcttcaaataattCAGAGAACGAAACTGATTGGATCAAAAAGCAATCTGAAAACTttggaaaaaaatcatttaccGAGGAAACCATGAAACTTGCTTTGGAGGAAGTGAAAAACGGAGCAACTGTCTATTCGATTGCaaagaaatacaaaattgCGCAAAGTACTATACGTCGCAGATTAAAATTTGGTATCAatatcaaaagaagaaagtcaaACCAGCCACAAATTCCTTTCGCATTGGAGACGAGACTTGCCGATTGGATCGTTGCTTGTAATGAATTGGGCGACACGAAGAATCATTCCAACATTTGCGAGATTGTTTCGCATTTtataaaacttcaaaaacgAAAGCACTGTGCCGCAATTGTCAACACTTGGGTTGATCGCTTTCTAAGACGACATCCTGAGACTTTAATTGAACCTTCGAAgGAATTAAAAAAACGATTTGAGTGCGATGTGTGTGGATACCAATACTCGAATAAGTCTGTTGTAAGAAATCACATCCTCGCTCTCCatgcaaagaaaaagttcaaatgcAAAATTTGTGAGAAGATATTTACTTCAATCAAGTGTCTTAGAGATCATGCATTTGAGCAACATCCCGCGTCTGGAAAAGCccaaaactttgtttgtgaAGTTTGTGCAAAAAGTTTCTACACATGGAAAGCTCTTCACACACATTCTAAGCTTCacaaggaaaagaaatttcattgcgatTTTGAAGGATGcgtcaagaaatttttatttgcaaaagaACTCGATGATCACAAGCGCAGTGATCACTACggaataaaagatttcaaatgtCAATTTGCTGGTTGCGACAAAGCTTACAACTCCAAACAAAGACAGATTCGACATCAAAAGGACTCACACGAGGAACGAGCGAAATGTCCAATCAACAATTGCAGTTTTCGTGTTGGTCGCGCTGCTTAcatgagaaatcatttgaagcgACACACAGATATTGATGATCAAGAGCTGCaggaatatttattgattgttaagaaaatgaaattgtcaaCTTGA
Protein Sequence: MVKTCELSEHQRLLVVNLSRQGKSHRKIQAETGIGKSTVYNILKKFKTYGTVKNLPRTGRKREFRLPEKTLSEIIKRKNGKIRNYSQEDLRNAPKEVQEGYSCNSIGKKYGIPEVTLRSRIAGCVNGRALQTEKPKSSCRLCLEQLEIETEAKLVEQDLEIKINEIFPSNVLRLPTASTNSLCIPCYAQVQDFHDFRSTIIQKHLNCEQFELCEIKMEQIDFNPVVNILAIKEEDLGEYEWNADDWNNEADAEVNGFEDVLEEIRKGEVQIHQLRNDLDKALKAIDKGSSITDAALKFNISESHLKDFADRSASPLEFDRKIANWIITSGELCDPKTKQNVLDAATHLSKLNSSTISNEFNDNWFRSFLKRNPDVLLPKVLRLESNVEEQAENFGTKSFTEETMKLALEEIENGATAYKTAKKYKIVLRTLSRRHKLCFKRKSKDPQIPRALETILADWIVACNELGDTKKHSNICEIASHFMKIQKRNHCPATVKDWVNRFLRRHPETLIESLKELAKFECDVCGYQQTNRSLIKNHILAVHAKKKFECKICEKSFTTIKCLRDHALEQHPAPGEEKNFVCEVLRSPTASSNYLCIPCFAQVEDFHQFRSTIINKHSNCEQFELCEIKMEQIDFNPVVNILAIKEEELGDYEWNADDWNNEPDAEMNAECDQRELEIPQSKNDSDNVSIEFDQGESIIPQSENDFEEVLEEIRKGELQIHQLQIDLDKALKAIDKGSSITDAALKFNISESHLKDFGDSSASPQEFDRKIANWIITSGEMCDPKTKQNVLDAATHLSKLDSSTISNEFNDNWFRSFLKRNPDVLLPNVLSLESNADDTTEDVPDDKASDNSENEIDWIKKQSENSRIKSFSEETMKLALEEVKNGATVYSIAKKYKIAHSTLSERLKFGCKRRKSKQPQIPIALETRLADWIVVCNELGDTKNHSNICKIASHFLKIQKRKHYPAVVEDWVDRFLRRHPETLIEPSKQLEKRFVCDLCGYQQTKRNYVRIHILAVHAKKKFEFKCKICEKSYLSIQCLKNHALEQHPAPGKAMNFVCEVCAKSFYTKSSFNSHSLLHKEKKFHCDFEGCNKKFLYANELDNHKRNDHYGIKDFKCQFPGCDKAYKDRQKQIRHQKDSHEERAKCPINNCTFRVLRSPTASSNSLCIPCYAQVQDFHHFRSTIINKHLNCEQFELCEIKMEQIDFNPVVNILAIKEEDLGDYEWNADDWNNETNTECDQRELEIPQLPNDSDNVSIESDQEESIIPQSENDFEEVLEEIRKGELQIHQLQIDLDKALKAIDKGSSITDAASKFKISESHLKDFADKSSSPQEFDRKIANWIKTSGEMCDPKTKQNVLDAATHLSKLDSSTISNEFNDNWFRSFLKRNPDVLLPNVLRLESDADKTTDDLPDDKASNNSENETDWIKKQSENFGKKSFTEETMKLALEEVKNGATVYSIAKKYKIAQSTIRRRLKFGINIKRRKSNQPQIPFALETRLADWIVACNELGDTKNHSNICEIVSHFIKLQKRKHCAAIVNTWVDRFLRRHPETLIEPSKELKKRFECDVCGYQYSNKSVVRNHILALHAKKKFKCKICEKIFTSIKCLRDHAFEQHPASGKAQNFVCEVCAKSFYTWKALHTHSKLHKEKKFHCDFEGCVKKFLFAKELDDHKRSDHYGIKDFKCQFAGCDKAYNSKQRQIRHQKDSHEERAKCPINNCSFRVGRAAYMRNHLKRHTDIDDQELQEYLLIVKKMKLST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01353258;
90% Identity: iTF_01353258;
80% Identity: iTF_01353258;