Basic Information

Gene Symbol
-
Assembly
GCA_033063855.1
Location
CP093831.1:27468591-27477574[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.0015 0.064 13.7 0.4 1 23 540 563 540 563 0.95
2 19 6.6e-05 0.0027 18.0 1.2 1 20 570 589 570 593 0.90
3 19 0.003 0.12 12.8 0.8 1 23 602 624 602 624 0.91
4 19 0.93 39 5.0 2.2 1 23 629 654 629 654 0.95
5 19 0.0014 0.057 13.9 1.5 1 23 660 685 660 685 0.96
6 19 0.34 14 6.3 0.5 2 23 690 713 690 713 0.97
7 19 0.01 0.43 11.1 0.3 1 20 1260 1279 1260 1283 0.96
8 19 6.6e-05 0.0027 18.0 1.2 1 20 1290 1309 1290 1313 0.90
9 19 0.003 0.12 12.8 0.8 1 23 1322 1344 1322 1344 0.91
10 19 0.22 9.3 6.9 1.9 1 23 1349 1374 1349 1374 0.95
11 19 0.0014 0.057 13.9 1.7 1 23 1380 1405 1380 1405 0.96
12 19 0.48 20 5.9 0.4 1 23 1792 1815 1792 1815 0.93
13 19 0.017 0.69 10.5 0.2 1 23 1822 1845 1822 1845 0.92
14 19 5.9 2.5e+02 2.4 1.3 1 23 2226 2249 2226 2249 0.95
15 19 0.0031 0.13 12.8 3.1 1 23 2254 2277 2254 2277 0.93
16 19 0.53 22 5.7 2.6 1 23 2286 2308 2286 2308 0.89
17 19 0.068 2.8 8.5 3.5 3 23 2315 2338 2313 2338 0.93
18 19 0.0063 0.26 11.8 0.7 1 23 2344 2369 2344 2369 0.93
19 19 1.9 81 4.0 0.4 2 23 2374 2397 2373 2397 0.96

Sequence Information

Coding Sequence
ATGTTTTCTAATAAGGCTTCAAAACGATTAATTCATCTAAAAGGCGGAAGGCCATTGCGTTTGACCTCATCAGAAGAATCTGAACTAGTCAAATGGATTGTCGAATTTGCTGAAAGCGGAAAACCAGCGAAAAAACGAGCAATTTTGAATGCTGCGATAGAAATACTTCGACGAAAGAGTGGAAAGCACGAAACTCTTTCAGAAAAATGGTATTATGGATTCCTACAACGTCACCCAGAGctgcgaaaacaaaaaacacCAAAAGTATCCAGAAAAAGTGATGATTGCAAGAAGGAAGCCTCAGAGAACCCTAAAAGTAGTTGCAGGCTTTGCCTTGAGCATCTTGAGAATGAAACAGAAAGTAAAACAGTGAAAGGAGATctcgagatgaaaataaacgaaattttcccttcgaaTGTTCTCCGATCGCCGACAGCTTCATCGAATTCTCTCTGCATTTCCTGCTACGCCCAAGTAAATGACTTTCATGACTTCAGATCAACGAtcatcaaaaaacatttgaacaGCGAACAATTTGAACTTTGCGAGATTAAAATGgaacaaatcgatttcaatccTGTCGTCAACCTTTTGGcgattaaagaagaagatttaggAGATTACGAATGGAACGCTGATGACTGGAACAATGAAACAAACACAGAAATTAACATTGAATGTGATCAAACAGAATTGCAAATTCCTCAACTGCCAAACGATTCTGATAACGCTTGGATAAAAATTCCTCAGTCGGAAAACGATTTCGAGTTAGTTTTAGAAGAACTTAAAAAAGGAGAATTGCAAATTCATCAATTACAAATCGATCTtgacaaagctttgaaagcaaTCGACAAAGGATCTCCCATCACCGACGCAGcattaaagttcaaaatttCGGAATCACATTTGAAGGATTTTGCAGACAGATCGGCTTCTCAAGAATTTGATcagaaaattgcaaattggATCATAACTTCTGGCGAATTGTGTGATCCAAAGACGAAACGAAATGTTATCGATGCTGCAActcatttatcaaaactcGACTCATCCACGatctcaaatgaatttaatgacAACTGGTTCCGAAGTTTCCTAAAGAGAAATCCCGATGTGCTACTTTCAAATGTATTTAGTTTAGAATCAAACGCCGATGAATCAACTGATGATCTTCCAGACGACAAAGCTTCAGATAAATCAGAGAACGAATTTGATTGGATTGAGGAACAAGTTGTGAACGctggaaaaaaatcatttaccgaggaaacaatgaaacttgctttggaggaaattgaaaacggaGCATCTATTAGATCGACTGGaagaaaatacaaaattgataaaagCACTTTATCTCGCAGACTAAAATTTGGcatcaaaagaagaaagtcaaAGCCACAAATTCCTATCGCATTAGAGACAAGACTTGCTAAGTGGATCGTAGTTTGTAACGAACTGGGTGACACGAAGGAtcattcaaacatttatgaGATTGTGTCGCATCTCTTCAGAATTCTACAACGAAAGCTTTATCCCACAACTGTTGAAGATTGGGTTGATCGCTTCTTAAGACGACATCCTGAGACTTTAATTGAACCTCTAAAgaaattagaaatgtttgaatgcGATTTGTGTGCACGTCAATTCAAGGAAAAGAGCAGTTTGAGGTATCACATGCTCGCAATTCATTTCAAGACAAAGAAAGAGTTCAAGTGCAAAATCTgtgaaaaaacatttactACAATCAAAAGTCTTAAAAGACATGCAGGACAAGAACATCCTGCGCCTGGAAAAGCAAAGGATTTCGTTTGTGATGTTTGCGGAATAAGTTTTTACACAAAAATCAGTTTGAGATTACACTCAGTCCATCACaaggagaaaaaatttcattgcgatTTTGAAGGATGCAACAGGAAATTTTTAAGACCGAAAGAACTCGACAATCACAAACGTAATGAACATTACGGgttgaaagatttcaaatgtGATTTTCCTGGCTGCGACAAAGGTTACAGCACCAGACAAAGACTGACACGACatcaaaaagagaaacacGAAGAACGAGCGAAATGTCCAATCAACGATTGCACTTTTCGTGTAAATCGCGCCGGTTACATGAAAGATCATTTGAAAAGACACACAGATATTGATGATCAAGAGCTGCaggaatatttattgattgttaagaaaatgaaattagGCGGAAGGCCATTGCGTTTGACCTCATCAGAAGAATCTGAACTAGTCAAATGGATTGTCGAATTTGCTGAAAGCGGAAAACCAGCGAAAAAACGAGCAATTTTGAACGCTGCGATAGAAATACTTCGACGAAAGAGTGGAAAGCACGAAACTCTTTCAGAAAAATGGTATTACGGATTCCTACAACGTCACCCAGAGctgcgaaaacaaaaaacacCAAAAGTATCCAGAAAAAGTGATGATTGCAAGAAGGAAGCCTCAGAGAACCCTAAAAGTAGTTGCAGACTTTGCCTTGAGCTGCTCGAGCATGAAACAGAAAGTAAAACAGTGAAAGGAGATctcgagatgaaaataaacgaaattttcccttcgaaTGTTCTTCGATTGCCGACAGCTTCATCGAATTCTCTCTGCATTTCCTGCTACGCTCAAGTAAATGACTTCCATCACTTCAGATCAACGAtcatcaaaaaacatttgaacaGCGAACAATTTGAACTTTGCGAGATTAAAATGgaacaaatcgatttcaatccTGTCGTCAACCTTTTGGcgattaaagaagaagatttaggAGAATACGAATGGAACGCTGATGACTGGAACAATGAAACAAACACAGAAATTAACATTGAATGTGATCAAACAGAATTGCAAATTCCTCAACTGCCAAACGATTCTGATAACGCTTGGATAAAAATTCCTCAGTCGGAAAACGATTTCGAGGAAGTTCTAgaagaaattagaaaaggagaattgaaaattcatcaattaCAAATCGATCTTgataaagctttgaaagcaaTCGACAAAGGATCTCCCATCACCGACGCAGcattaaagttcaaaatttCGGAATCACATTTGAAGGATTTTGCAGACAGATCGGTTTCTCCTCAAGAATTTGATcggaaaattgcaaattggATCAAGACTTCTGGCGAATTATGTGATCCAAAgacgaaacaaaatgttctcgATGCTGCAACTCATTTATCCAAACTCGACTCATCCACGAtctcaaatgaattcaatgacAACTGGTTCCGAAGTTTTCTAAAGAGAAATCCTGATGTGCTACTTCCAAATGTATTGAGATTAGAATCAAACGCCGATGAATCAACTGATGATCTTCCAGACGACAAAGCTTCAGATAAATCAGAGAACGAATTTGATTGGATTGAGGAACAAGTTGTCAACGCTggattaaaatcatttaccgaggaaacaatgaaacttgctttggaggaaattgaaaatggagCATCTATTAGATCGACTGGaagaaaatacaaaattgataaaagCACTTTATCTCGCAGACTAAAATTTGGcatcaaaagaagaaagtcaaAGCCACAAATTCCTTTCGCATTAGAGACGAGATTTGCTGAGTGGATCGTAGTTTGTAACGAACTGGGTGACACGAAGGAccattcaaacatttatgaGATTGTGTCGCATCTCTTCAGAATTCTACAACGAAAGCTTTATCCCACAACTGTTGAAGATTGGGTTGATCGCTTCTTAAGACGACATCCTGAGACTTTAATTGAACCTCTAAAgaaattagaaatgtttgaatgcGATTTGTGTGCACGTCAATTCAAGGAAAAGAGCAGTTTGAGGTATCACATGCCCGCAATTCATTTCAAGACAAAGAAAGAGTTCAAGTGCAAAATCTgtgagaaaacatttactACAATCAAAAGTCTTAAAAGACATGCAGGACAAGAACATCCTGCGCCTGGGAAAGCAAAGGATTTCGTTTGTGATGTTTGCGGAATAAGTTTTTACACAAAAATCAGTTTGAGATTACACTCAGTCCATCAcaaggagaagaaatttcattgcgatTTTGAAGGATgtgacaaaaagtttttaagacCAAAAGAGCTCGACAACCACAAACGTAATGAACATTACGGAATTAAAACTTACAAATGTCAATATCCCGGCTGCGACAAAGGTTACAGCACCAGACAAAGACTGACACGACatcaaaaagagaaacacGAAGAACGAGCGAAATGTCCAATCAACAATTGCACTTTTCGTgtTCTTCAATTGCCGACAGCTTCATCGAATTCTCTCTGTATTTCCTGCTACGCTCAAGTAAATGACTTTTATCACTTCAGATCAACGATCATCAAGAAGCATGAAAGTTACTCGAACTGCGAACAATTTGAACTTTGCGAGATTAAAATGgaacaaatcgatttcaatccTGTCGTCAACATTTTGGcgattaaagaagaagatttaggAGATTACGAGTGGAATGCTGATGACTGGAACAATGAAGCTGATGCAGAAATCAACACTGAATGTGATCAAAGAGAATTGGAAATTCCTCAATCGGAAAACGTTCTCGGCAATGTCTTGCAAGCAATTGACAAAGGATCTTCCATCACCGACGCAGCTTTAAACTTCAACATTTCGGAATCACATTTGAAGGATTTTGGCGACAAATCGAGTTCTCCTCAAGAATTTGATcgaaaaattgcaaattggATCATAACTTCTGGCGAAATGTGCGATCCAAAgacgaaacaaaatgttctcgATGCTGCAACTCATTTATCCAAACTCGACTCATCCACTAtctcaaatgaattcaatgacAACTGGTTCCGAAGCTTTCTAAAGAGAAATCCTGATGTGCTACTTGCAAAAgtattgattttaaaatcaaacgCTGATGATACAACTGAGGATCCTAAAGACGACAAAGCTTTAGATAACTCAGAAAACGAAACTGATTGGATCAAGAAGCAATCTGAAAACGctggaaaaaaatcatttaccGAGGAAACGATGAAACTTGcattgaaggaaattgaaaacggaGCAACTGTCTattcgattgaaaagaaatacaaaattgCCAGAAATACTTTGATTCGCAGACAAAAATTTGGTATCAatatcaaaagaagaaagtctGACCAGCCATTAATTTCTGTCGCATTAGAGATAAGACTTGCTGAGTGGATCGTTCTTTGTAACGAACTTGGTGACACGAAGAATCATTCAAACATTTGTGAGATTGTTTCGcgtttcataaaaattcaaaaacgaAAGCACTGTCTTGCAATGGTTGAAGATTGGGTTGATCGCTTCTTAAGACGACATCCTGAGACTTTAATTGAACCTTCGAAggaattagaaaaatttgaGTGCGATGTGTGTGGATATCAACagacgaataaatttgttctAAGAAATCACATCCTCGATACTCATTctaaaacaaagaaaaagttcaaatgcAAAATCTGTGAGAAGGCAATTATTTCAATCTCTAGTCTAAAACAACATGAACTTGAGCAACATCCCGCGCCTGGAAGTACAAAGAACTTTGTTTGTAAAgtTCTTCGATTGCCGACAGCTTCATCGAATTCTCTCTGCATTCCCTGCTACGCCCAAGTAAATGACTTTCATCTCTTCAGATCAACGATCATCAAAAAGCACTCGAACTGCGAGCAATTTGAACTttgcgaaattaaaatggaaCAAATCGGCTGTAATCCTGCCGTCAACATTTTGgcaatcaaagaagaagatttaggAGAATACGAGTGGAATGATGATGACTGGAACAATGAAACTTACACAGATTTCAACATTGAATGTGAGCAACGAGAATTGGAAATTCATCAATCGGAAAACGTTCTCGACAATGTCTTGATGGAAATTGACAAAGGATCTTCCATCACTGACGCagctttaaagttcaaaatttCGGAATCACATTTGAAGGATTTTGGCGACAGTTCGGATTCTCCTCAAGAATTTGATcggaaaattgcaaattggATCATAACTTCTGGCGAAATGTGTGATCCAAAgacgaaacaaaatgttCTTGATGCTGCAAATCATTTATCCAAACTCAACTCATCCACGATcacaaatgaattcaatgacAATTGGTTCCGATGTtttctaaaaagaaatcctGATGTGCTACTTCCAAAAgtattcattttaaaatcaaatgctGATGAAACAACTGATGATCCTAAAGATGACAAAGCTTTAGATATTTCAGAGAACGAAATTGATTGGATTGAGGAACAAGCTATAAACGCTggattaaaatcatttaccGAGGAAACCATGAAACttgctttgaaagaaattgaaaatggagCCAATGCCTATAAGACAGGaaagaaatacaaaattggcagaaatattttgattcgCAGACATAAACTTCAaagcaagagaagaaagtcaAAGCAGCAGCCACAAATTTCTCGCGCATTGGAGACGAGACTTGCCGAATGGACCGTTCTTTGTCACGAACTGGGTGACACGAAGAATCATTCCAACATTTGTGAGATTGTTTCGCACTTTATGAAAATTCAGAAACGAAAGCACTGTCTTGCAATGGTTGAAGATTGGGTTGATCGCTTCTTAAGACGACATCCTGAGACGTTAATTGAACCTTCGAAggaattagaaaagtttgaatgcGATTTGTGTGAATATCAACACACAAAACGATCTCTTGTAAGATATCATATCCGAGCTGTCCatgcaaagaaaaagttcaattgcaaaatctgtgagaaaacatttaaaacaatCAATTGTCTTAAAAATCATGTTCTTGAACAACATCCTGCTCCTGAAAGTACAAAGAACTTTGTTTGTGAAGTTTGCgcaaaaagcttcaacaccaaaagatttcttcactttcaCGCTAAGCTTCAcaaggagagaaaaattcattgcgaCTTTGAAGGATgcaacaaaacatttttaaaatcgaaaaaactCAAGAAGCACCAGCGCAGTGATCACTTGggaataaaagatttcaaatgtGATTTTCCTGGCTGCGAAAAAGGTTACAGCAACAAGCAAAGACTGACGCGACATCAAATAGACTCACACGAGGAACCATCGAAATGTCCAGTCAACGATTGCAGTTTTCGTGTTGGTCGCGCtgctttcatgaaaaatcatttgaagagACACACAGATATTGATGATCAAGAACTGCaggaatatttattgattgtaaagaaaatgaaattgtcaaCTTGA
Protein Sequence
MFSNKASKRLIHLKGGRPLRLTSSEESELVKWIVEFAESGKPAKKRAILNAAIEILRRKSGKHETLSEKWYYGFLQRHPELRKQKTPKVSRKSDDCKKEASENPKSSCRLCLEHLENETESKTVKGDLEMKINEIFPSNVLRSPTASSNSLCISCYAQVNDFHDFRSTIIKKHLNSEQFELCEIKMEQIDFNPVVNLLAIKEEDLGDYEWNADDWNNETNTEINIECDQTELQIPQLPNDSDNAWIKIPQSENDFELVLEELKKGELQIHQLQIDLDKALKAIDKGSPITDAALKFKISESHLKDFADRSASQEFDQKIANWIITSGELCDPKTKRNVIDAATHLSKLDSSTISNEFNDNWFRSFLKRNPDVLLSNVFSLESNADESTDDLPDDKASDKSENEFDWIEEQVVNAGKKSFTEETMKLALEEIENGASIRSTGRKYKIDKSTLSRRLKFGIKRRKSKPQIPIALETRLAKWIVVCNELGDTKDHSNIYEIVSHLFRILQRKLYPTTVEDWVDRFLRRHPETLIEPLKKLEMFECDLCARQFKEKSSLRYHMLAIHFKTKKEFKCKICEKTFTTIKSLKRHAGQEHPAPGKAKDFVCDVCGISFYTKISLRLHSVHHKEKKFHCDFEGCNRKFLRPKELDNHKRNEHYGLKDFKCDFPGCDKGYSTRQRLTRHQKEKHEERAKCPINDCTFRVNRAGYMKDHLKRHTDIDDQELQEYLLIVKKMKLGGRPLRLTSSEESELVKWIVEFAESGKPAKKRAILNAAIEILRRKSGKHETLSEKWYYGFLQRHPELRKQKTPKVSRKSDDCKKEASENPKSSCRLCLELLEHETESKTVKGDLEMKINEIFPSNVLRLPTASSNSLCISCYAQVNDFHHFRSTIIKKHLNSEQFELCEIKMEQIDFNPVVNLLAIKEEDLGEYEWNADDWNNETNTEINIECDQTELQIPQLPNDSDNAWIKIPQSENDFEEVLEEIRKGELKIHQLQIDLDKALKAIDKGSPITDAALKFKISESHLKDFADRSVSPQEFDRKIANWIKTSGELCDPKTKQNVLDAATHLSKLDSSTISNEFNDNWFRSFLKRNPDVLLPNVLRLESNADESTDDLPDDKASDKSENEFDWIEEQVVNAGLKSFTEETMKLALEEIENGASIRSTGRKYKIDKSTLSRRLKFGIKRRKSKPQIPFALETRFAEWIVVCNELGDTKDHSNIYEIVSHLFRILQRKLYPTTVEDWVDRFLRRHPETLIEPLKKLEMFECDLCARQFKEKSSLRYHMPAIHFKTKKEFKCKICEKTFTTIKSLKRHAGQEHPAPGKAKDFVCDVCGISFYTKISLRLHSVHHKEKKFHCDFEGCDKKFLRPKELDNHKRNEHYGIKTYKCQYPGCDKGYSTRQRLTRHQKEKHEERAKCPINNCTFRVLQLPTASSNSLCISCYAQVNDFYHFRSTIIKKHESYSNCEQFELCEIKMEQIDFNPVVNILAIKEEDLGDYEWNADDWNNEADAEINTECDQRELEIPQSENVLGNVLQAIDKGSSITDAALNFNISESHLKDFGDKSSSPQEFDRKIANWIITSGEMCDPKTKQNVLDAATHLSKLDSSTISNEFNDNWFRSFLKRNPDVLLAKVLILKSNADDTTEDPKDDKALDNSENETDWIKKQSENAGKKSFTEETMKLALKEIENGATVYSIEKKYKIARNTLIRRQKFGINIKRRKSDQPLISVALEIRLAEWIVLCNELGDTKNHSNICEIVSRFIKIQKRKHCLAMVEDWVDRFLRRHPETLIEPSKELEKFECDVCGYQQTNKFVLRNHILDTHSKTKKKFKCKICEKAIISISSLKQHELEQHPAPGSTKNFVCKVLRLPTASSNSLCIPCYAQVNDFHLFRSTIIKKHSNCEQFELCEIKMEQIGCNPAVNILAIKEEDLGEYEWNDDDWNNETYTDFNIECEQRELEIHQSENVLDNVLMEIDKGSSITDAALKFKISESHLKDFGDSSDSPQEFDRKIANWIITSGEMCDPKTKQNVLDAANHLSKLNSSTITNEFNDNWFRCFLKRNPDVLLPKVFILKSNADETTDDPKDDKALDISENEIDWIEEQAINAGLKSFTEETMKLALKEIENGANAYKTGKKYKIGRNILIRRHKLQSKRRKSKQQPQISRALETRLAEWTVLCHELGDTKNHSNICEIVSHFMKIQKRKHCLAMVEDWVDRFLRRHPETLIEPSKELEKFECDLCEYQHTKRSLVRYHIRAVHAKKKFNCKICEKTFKTINCLKNHVLEQHPAPESTKNFVCEVCAKSFNTKRFLHFHAKLHKERKIHCDFEGCNKTFLKSKKLKKHQRSDHLGIKDFKCDFPGCEKGYSNKQRLTRHQIDSHEEPSKCPVNDCSFRVGRAAFMKNHLKRHTDIDDQELQEYLLIVKKMKLST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01352566;
90% Identity
iTF_01352566;
80% Identity
iTF_01352566;