Sate014837.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093831.1:27468591-27477574[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 8.2 5.7e+03 -2.9 0.0 4 15 275 286 275 301 0.74 2 6 3e-06 0.0021 17.7 0.0 1 38 420 456 420 462 0.94 3 6 7.3 5.1e+03 -2.7 0.0 4 16 994 1006 994 1022 0.71 4 6 3e-06 0.0021 17.7 0.0 1 38 1140 1176 1140 1182 0.94 5 6 0.067 47 3.8 0.0 1 38 1669 1705 1669 1712 0.78 6 6 2.7 1.9e+03 -1.3 0.0 1 15 2104 2118 2104 2133 0.93
Sequence Information
- Coding Sequence
- ATGTTTTCTAATAAGGCTTCAAAACGATTAATTCATCTAAAAGGCGGAAGGCCATTGCGTTTGACCTCATCAGAAGAATCTGAACTAGTCAAATGGATTGTCGAATTTGCTGAAAGCGGAAAACCAGCGAAAAAACGAGCAATTTTGAATGCTGCGATAGAAATACTTCGACGAAAGAGTGGAAAGCACGAAACTCTTTCAGAAAAATGGTATTATGGATTCCTACAACGTCACCCAGAGctgcgaaaacaaaaaacacCAAAAGTATCCAGAAAAAGTGATGATTGCAAGAAGGAAGCCTCAGAGAACCCTAAAAGTAGTTGCAGGCTTTGCCTTGAGCATCTTGAGAATGAAACAGAAAGTAAAACAGTGAAAGGAGATctcgagatgaaaataaacgaaattttcccttcgaaTGTTCTCCGATCGCCGACAGCTTCATCGAATTCTCTCTGCATTTCCTGCTACGCCCAAGTAAATGACTTTCATGACTTCAGATCAACGAtcatcaaaaaacatttgaacaGCGAACAATTTGAACTTTGCGAGATTAAAATGgaacaaatcgatttcaatccTGTCGTCAACCTTTTGGcgattaaagaagaagatttaggAGATTACGAATGGAACGCTGATGACTGGAACAATGAAACAAACACAGAAATTAACATTGAATGTGATCAAACAGAATTGCAAATTCCTCAACTGCCAAACGATTCTGATAACGCTTGGATAAAAATTCCTCAGTCGGAAAACGATTTCGAGTTAGTTTTAGAAGAACTTAAAAAAGGAGAATTGCAAATTCATCAATTACAAATCGATCTtgacaaagctttgaaagcaaTCGACAAAGGATCTCCCATCACCGACGCAGcattaaagttcaaaatttCGGAATCACATTTGAAGGATTTTGCAGACAGATCGGCTTCTCAAGAATTTGATcagaaaattgcaaattggATCATAACTTCTGGCGAATTGTGTGATCCAAAGACGAAACGAAATGTTATCGATGCTGCAActcatttatcaaaactcGACTCATCCACGatctcaaatgaatttaatgacAACTGGTTCCGAAGTTTCCTAAAGAGAAATCCCGATGTGCTACTTTCAAATGTATTTAGTTTAGAATCAAACGCCGATGAATCAACTGATGATCTTCCAGACGACAAAGCTTCAGATAAATCAGAGAACGAATTTGATTGGATTGAGGAACAAGTTGTGAACGctggaaaaaaatcatttaccgaggaaacaatgaaacttgctttggaggaaattgaaaacggaGCATCTATTAGATCGACTGGaagaaaatacaaaattgataaaagCACTTTATCTCGCAGACTAAAATTTGGcatcaaaagaagaaagtcaaAGCCACAAATTCCTATCGCATTAGAGACAAGACTTGCTAAGTGGATCGTAGTTTGTAACGAACTGGGTGACACGAAGGAtcattcaaacatttatgaGATTGTGTCGCATCTCTTCAGAATTCTACAACGAAAGCTTTATCCCACAACTGTTGAAGATTGGGTTGATCGCTTCTTAAGACGACATCCTGAGACTTTAATTGAACCTCTAAAgaaattagaaatgtttgaatgcGATTTGTGTGCACGTCAATTCAAGGAAAAGAGCAGTTTGAGGTATCACATGCTCGCAATTCATTTCAAGACAAAGAAAGAGTTCAAGTGCAAAATCTgtgaaaaaacatttactACAATCAAAAGTCTTAAAAGACATGCAGGACAAGAACATCCTGCGCCTGGAAAAGCAAAGGATTTCGTTTGTGATGTTTGCGGAATAAGTTTTTACACAAAAATCAGTTTGAGATTACACTCAGTCCATCACaaggagaaaaaatttcattgcgatTTTGAAGGATGCAACAGGAAATTTTTAAGACCGAAAGAACTCGACAATCACAAACGTAATGAACATTACGGgttgaaagatttcaaatgtGATTTTCCTGGCTGCGACAAAGGTTACAGCACCAGACAAAGACTGACACGACatcaaaaagagaaacacGAAGAACGAGCGAAATGTCCAATCAACGATTGCACTTTTCGTGTAAATCGCGCCGGTTACATGAAAGATCATTTGAAAAGACACACAGATATTGATGATCAAGAGCTGCaggaatatttattgattgttaagaaaatgaaattagGCGGAAGGCCATTGCGTTTGACCTCATCAGAAGAATCTGAACTAGTCAAATGGATTGTCGAATTTGCTGAAAGCGGAAAACCAGCGAAAAAACGAGCAATTTTGAACGCTGCGATAGAAATACTTCGACGAAAGAGTGGAAAGCACGAAACTCTTTCAGAAAAATGGTATTACGGATTCCTACAACGTCACCCAGAGctgcgaaaacaaaaaacacCAAAAGTATCCAGAAAAAGTGATGATTGCAAGAAGGAAGCCTCAGAGAACCCTAAAAGTAGTTGCAGACTTTGCCTTGAGCTGCTCGAGCATGAAACAGAAAGTAAAACAGTGAAAGGAGATctcgagatgaaaataaacgaaattttcccttcgaaTGTTCTTCGATTGCCGACAGCTTCATCGAATTCTCTCTGCATTTCCTGCTACGCTCAAGTAAATGACTTCCATCACTTCAGATCAACGAtcatcaaaaaacatttgaacaGCGAACAATTTGAACTTTGCGAGATTAAAATGgaacaaatcgatttcaatccTGTCGTCAACCTTTTGGcgattaaagaagaagatttaggAGAATACGAATGGAACGCTGATGACTGGAACAATGAAACAAACACAGAAATTAACATTGAATGTGATCAAACAGAATTGCAAATTCCTCAACTGCCAAACGATTCTGATAACGCTTGGATAAAAATTCCTCAGTCGGAAAACGATTTCGAGGAAGTTCTAgaagaaattagaaaaggagaattgaaaattcatcaattaCAAATCGATCTTgataaagctttgaaagcaaTCGACAAAGGATCTCCCATCACCGACGCAGcattaaagttcaaaatttCGGAATCACATTTGAAGGATTTTGCAGACAGATCGGTTTCTCCTCAAGAATTTGATcggaaaattgcaaattggATCAAGACTTCTGGCGAATTATGTGATCCAAAgacgaaacaaaatgttctcgATGCTGCAACTCATTTATCCAAACTCGACTCATCCACGAtctcaaatgaattcaatgacAACTGGTTCCGAAGTTTTCTAAAGAGAAATCCTGATGTGCTACTTCCAAATGTATTGAGATTAGAATCAAACGCCGATGAATCAACTGATGATCTTCCAGACGACAAAGCTTCAGATAAATCAGAGAACGAATTTGATTGGATTGAGGAACAAGTTGTCAACGCTggattaaaatcatttaccgaggaaacaatgaaacttgctttggaggaaattgaaaatggagCATCTATTAGATCGACTGGaagaaaatacaaaattgataaaagCACTTTATCTCGCAGACTAAAATTTGGcatcaaaagaagaaagtcaaAGCCACAAATTCCTTTCGCATTAGAGACGAGATTTGCTGAGTGGATCGTAGTTTGTAACGAACTGGGTGACACGAAGGAccattcaaacatttatgaGATTGTGTCGCATCTCTTCAGAATTCTACAACGAAAGCTTTATCCCACAACTGTTGAAGATTGGGTTGATCGCTTCTTAAGACGACATCCTGAGACTTTAATTGAACCTCTAAAgaaattagaaatgtttgaatgcGATTTGTGTGCACGTCAATTCAAGGAAAAGAGCAGTTTGAGGTATCACATGCCCGCAATTCATTTCAAGACAAAGAAAGAGTTCAAGTGCAAAATCTgtgagaaaacatttactACAATCAAAAGTCTTAAAAGACATGCAGGACAAGAACATCCTGCGCCTGGGAAAGCAAAGGATTTCGTTTGTGATGTTTGCGGAATAAGTTTTTACACAAAAATCAGTTTGAGATTACACTCAGTCCATCAcaaggagaagaaatttcattgcgatTTTGAAGGATgtgacaaaaagtttttaagacCAAAAGAGCTCGACAACCACAAACGTAATGAACATTACGGAATTAAAACTTACAAATGTCAATATCCCGGCTGCGACAAAGGTTACAGCACCAGACAAAGACTGACACGACatcaaaaagagaaacacGAAGAACGAGCGAAATGTCCAATCAACAATTGCACTTTTCGTgtTCTTCAATTGCCGACAGCTTCATCGAATTCTCTCTGTATTTCCTGCTACGCTCAAGTAAATGACTTTTATCACTTCAGATCAACGATCATCAAGAAGCATGAAAGTTACTCGAACTGCGAACAATTTGAACTTTGCGAGATTAAAATGgaacaaatcgatttcaatccTGTCGTCAACATTTTGGcgattaaagaagaagatttaggAGATTACGAGTGGAATGCTGATGACTGGAACAATGAAGCTGATGCAGAAATCAACACTGAATGTGATCAAAGAGAATTGGAAATTCCTCAATCGGAAAACGTTCTCGGCAATGTCTTGCAAGCAATTGACAAAGGATCTTCCATCACCGACGCAGCTTTAAACTTCAACATTTCGGAATCACATTTGAAGGATTTTGGCGACAAATCGAGTTCTCCTCAAGAATTTGATcgaaaaattgcaaattggATCATAACTTCTGGCGAAATGTGCGATCCAAAgacgaaacaaaatgttctcgATGCTGCAACTCATTTATCCAAACTCGACTCATCCACTAtctcaaatgaattcaatgacAACTGGTTCCGAAGCTTTCTAAAGAGAAATCCTGATGTGCTACTTGCAAAAgtattgattttaaaatcaaacgCTGATGATACAACTGAGGATCCTAAAGACGACAAAGCTTTAGATAACTCAGAAAACGAAACTGATTGGATCAAGAAGCAATCTGAAAACGctggaaaaaaatcatttaccGAGGAAACGATGAAACTTGcattgaaggaaattgaaaacggaGCAACTGTCTattcgattgaaaagaaatacaaaattgCCAGAAATACTTTGATTCGCAGACAAAAATTTGGTATCAatatcaaaagaagaaagtctGACCAGCCATTAATTTCTGTCGCATTAGAGATAAGACTTGCTGAGTGGATCGTTCTTTGTAACGAACTTGGTGACACGAAGAATCATTCAAACATTTGTGAGATTGTTTCGcgtttcataaaaattcaaaaacgaAAGCACTGTCTTGCAATGGTTGAAGATTGGGTTGATCGCTTCTTAAGACGACATCCTGAGACTTTAATTGAACCTTCGAAggaattagaaaaatttgaGTGCGATGTGTGTGGATATCAACagacgaataaatttgttctAAGAAATCACATCCTCGATACTCATTctaaaacaaagaaaaagttcaaatgcAAAATCTGTGAGAAGGCAATTATTTCAATCTCTAGTCTAAAACAACATGAACTTGAGCAACATCCCGCGCCTGGAAGTACAAAGAACTTTGTTTGTAAAgtTCTTCGATTGCCGACAGCTTCATCGAATTCTCTCTGCATTCCCTGCTACGCCCAAGTAAATGACTTTCATCTCTTCAGATCAACGATCATCAAAAAGCACTCGAACTGCGAGCAATTTGAACTttgcgaaattaaaatggaaCAAATCGGCTGTAATCCTGCCGTCAACATTTTGgcaatcaaagaagaagatttaggAGAATACGAGTGGAATGATGATGACTGGAACAATGAAACTTACACAGATTTCAACATTGAATGTGAGCAACGAGAATTGGAAATTCATCAATCGGAAAACGTTCTCGACAATGTCTTGATGGAAATTGACAAAGGATCTTCCATCACTGACGCagctttaaagttcaaaatttCGGAATCACATTTGAAGGATTTTGGCGACAGTTCGGATTCTCCTCAAGAATTTGATcggaaaattgcaaattggATCATAACTTCTGGCGAAATGTGTGATCCAAAgacgaaacaaaatgttCTTGATGCTGCAAATCATTTATCCAAACTCAACTCATCCACGATcacaaatgaattcaatgacAATTGGTTCCGATGTtttctaaaaagaaatcctGATGTGCTACTTCCAAAAgtattcattttaaaatcaaatgctGATGAAACAACTGATGATCCTAAAGATGACAAAGCTTTAGATATTTCAGAGAACGAAATTGATTGGATTGAGGAACAAGCTATAAACGCTggattaaaatcatttaccGAGGAAACCATGAAACttgctttgaaagaaattgaaaatggagCCAATGCCTATAAGACAGGaaagaaatacaaaattggcagaaatattttgattcgCAGACATAAACTTCAaagcaagagaagaaagtcaAAGCAGCAGCCACAAATTTCTCGCGCATTGGAGACGAGACTTGCCGAATGGACCGTTCTTTGTCACGAACTGGGTGACACGAAGAATCATTCCAACATTTGTGAGATTGTTTCGCACTTTATGAAAATTCAGAAACGAAAGCACTGTCTTGCAATGGTTGAAGATTGGGTTGATCGCTTCTTAAGACGACATCCTGAGACGTTAATTGAACCTTCGAAggaattagaaaagtttgaatgcGATTTGTGTGAATATCAACACACAAAACGATCTCTTGTAAGATATCATATCCGAGCTGTCCatgcaaagaaaaagttcaattgcaaaatctgtgagaaaacatttaaaacaatCAATTGTCTTAAAAATCATGTTCTTGAACAACATCCTGCTCCTGAAAGTACAAAGAACTTTGTTTGTGAAGTTTGCgcaaaaagcttcaacaccaaaagatttcttcactttcaCGCTAAGCTTCAcaaggagagaaaaattcattgcgaCTTTGAAGGATgcaacaaaacatttttaaaatcgaaaaaactCAAGAAGCACCAGCGCAGTGATCACTTGggaataaaagatttcaaatgtGATTTTCCTGGCTGCGAAAAAGGTTACAGCAACAAGCAAAGACTGACGCGACATCAAATAGACTCACACGAGGAACCATCGAAATGTCCAGTCAACGATTGCAGTTTTCGTGTTGGTCGCGCtgctttcatgaaaaatcatttgaagagACACACAGATATTGATGATCAAGAACTGCaggaatatttattgattgtaaagaaaatgaaattgtcaaCTTGA
- Protein Sequence
- MFSNKASKRLIHLKGGRPLRLTSSEESELVKWIVEFAESGKPAKKRAILNAAIEILRRKSGKHETLSEKWYYGFLQRHPELRKQKTPKVSRKSDDCKKEASENPKSSCRLCLEHLENETESKTVKGDLEMKINEIFPSNVLRSPTASSNSLCISCYAQVNDFHDFRSTIIKKHLNSEQFELCEIKMEQIDFNPVVNLLAIKEEDLGDYEWNADDWNNETNTEINIECDQTELQIPQLPNDSDNAWIKIPQSENDFELVLEELKKGELQIHQLQIDLDKALKAIDKGSPITDAALKFKISESHLKDFADRSASQEFDQKIANWIITSGELCDPKTKRNVIDAATHLSKLDSSTISNEFNDNWFRSFLKRNPDVLLSNVFSLESNADESTDDLPDDKASDKSENEFDWIEEQVVNAGKKSFTEETMKLALEEIENGASIRSTGRKYKIDKSTLSRRLKFGIKRRKSKPQIPIALETRLAKWIVVCNELGDTKDHSNIYEIVSHLFRILQRKLYPTTVEDWVDRFLRRHPETLIEPLKKLEMFECDLCARQFKEKSSLRYHMLAIHFKTKKEFKCKICEKTFTTIKSLKRHAGQEHPAPGKAKDFVCDVCGISFYTKISLRLHSVHHKEKKFHCDFEGCNRKFLRPKELDNHKRNEHYGLKDFKCDFPGCDKGYSTRQRLTRHQKEKHEERAKCPINDCTFRVNRAGYMKDHLKRHTDIDDQELQEYLLIVKKMKLGGRPLRLTSSEESELVKWIVEFAESGKPAKKRAILNAAIEILRRKSGKHETLSEKWYYGFLQRHPELRKQKTPKVSRKSDDCKKEASENPKSSCRLCLELLEHETESKTVKGDLEMKINEIFPSNVLRLPTASSNSLCISCYAQVNDFHHFRSTIIKKHLNSEQFELCEIKMEQIDFNPVVNLLAIKEEDLGEYEWNADDWNNETNTEINIECDQTELQIPQLPNDSDNAWIKIPQSENDFEEVLEEIRKGELKIHQLQIDLDKALKAIDKGSPITDAALKFKISESHLKDFADRSVSPQEFDRKIANWIKTSGELCDPKTKQNVLDAATHLSKLDSSTISNEFNDNWFRSFLKRNPDVLLPNVLRLESNADESTDDLPDDKASDKSENEFDWIEEQVVNAGLKSFTEETMKLALEEIENGASIRSTGRKYKIDKSTLSRRLKFGIKRRKSKPQIPFALETRFAEWIVVCNELGDTKDHSNIYEIVSHLFRILQRKLYPTTVEDWVDRFLRRHPETLIEPLKKLEMFECDLCARQFKEKSSLRYHMPAIHFKTKKEFKCKICEKTFTTIKSLKRHAGQEHPAPGKAKDFVCDVCGISFYTKISLRLHSVHHKEKKFHCDFEGCDKKFLRPKELDNHKRNEHYGIKTYKCQYPGCDKGYSTRQRLTRHQKEKHEERAKCPINNCTFRVLQLPTASSNSLCISCYAQVNDFYHFRSTIIKKHESYSNCEQFELCEIKMEQIDFNPVVNILAIKEEDLGDYEWNADDWNNEADAEINTECDQRELEIPQSENVLGNVLQAIDKGSSITDAALNFNISESHLKDFGDKSSSPQEFDRKIANWIITSGEMCDPKTKQNVLDAATHLSKLDSSTISNEFNDNWFRSFLKRNPDVLLAKVLILKSNADDTTEDPKDDKALDNSENETDWIKKQSENAGKKSFTEETMKLALKEIENGATVYSIEKKYKIARNTLIRRQKFGINIKRRKSDQPLISVALEIRLAEWIVLCNELGDTKNHSNICEIVSRFIKIQKRKHCLAMVEDWVDRFLRRHPETLIEPSKELEKFECDVCGYQQTNKFVLRNHILDTHSKTKKKFKCKICEKAIISISSLKQHELEQHPAPGSTKNFVCKVLRLPTASSNSLCIPCYAQVNDFHLFRSTIIKKHSNCEQFELCEIKMEQIGCNPAVNILAIKEEDLGEYEWNDDDWNNETYTDFNIECEQRELEIHQSENVLDNVLMEIDKGSSITDAALKFKISESHLKDFGDSSDSPQEFDRKIANWIITSGEMCDPKTKQNVLDAANHLSKLNSSTITNEFNDNWFRCFLKRNPDVLLPKVFILKSNADETTDDPKDDKALDISENEIDWIEEQAINAGLKSFTEETMKLALKEIENGANAYKTGKKYKIGRNILIRRHKLQSKRRKSKQQPQISRALETRLAEWTVLCHELGDTKNHSNICEIVSHFMKIQKRKHCLAMVEDWVDRFLRRHPETLIEPSKELEKFECDLCEYQHTKRSLVRYHIRAVHAKKKFNCKICEKTFKTINCLKNHVLEQHPAPESTKNFVCEVCAKSFNTKRFLHFHAKLHKERKIHCDFEGCNKTFLKSKKLKKHQRSDHLGIKDFKCDFPGCEKGYSNKQRLTRHQIDSHEEPSKCPVNDCSFRVGRAAFMKNHLKRHTDIDDQELQEYLLIVKKMKLST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01353072;
- 90% Identity
- iTF_01353072;
- 80% Identity
- iTF_01353072;