Sate000502.2
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- lrrfip2
- Assembly
- GCA_033063855.1
- Location
- CP093829.1:2481057-2486323[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.1 9e+02 -1.1 1.2 26 76 64 113 21 139 0.65 2 3 1.1e-104 9.7e-101 337.0 38.4 1 299 160 446 160 447 0.94 3 3 0.11 9.5e+02 -1.2 3.4 136 232 482 515 452 522 0.44
Sequence Information
- Coding Sequence
- ATGGATTCTCCTGGAGCCGGTGGAAGACGTCGAGGAACGACCAGAGTTTCAGCAGAAGATCAAGCACTTGATCAAATTGCGAAAGAgAACGACGACGATAACGAATCGAGTGGTGAACTTTTTGATTCTAGTGACAAGCTAGAAATAGACGAGAGTGCAAAACGAAACAGTTTGTTAATAGTTGAGGAGAAAGATCTTGAAATGGACGCCGCTGAAGATCAAAACAATAACAACAGCGAGAGCAATCACAGACTGTCACTTCATGTCGGCAGTGATGAGGAAAACAGCAACGAAGCGATCAATCGAACAATAATCAGAATTGGATCGAATGACTCGAGTTGTGATTTCGGTGAAGCAGAAACAAACGCCGAGAAACCACACGAGGCAATCAATCACGAAATAGGTGATAACGCGAGAGAAAAGTATCCAGACGATGACGAGGGAATCGTCGATATCTTGGGTCAAATTGATATTCTAgCGGAAGCTAGACTTGCAGCGAAGCGACAAGCTCGCGCGGAAGCTCGTGAGATTCGTATGCGAGAGTTAGATCGTCAACAAAAGGAACTTGAACAAAACGCTGATCGTGTTTACGACATGCAACAATCCGAAGTGCTCTCAACACCCCGATCTCGCCTTATCGTCAATAATCACACGACGGCAATTCGCGGGAACTCAATGTCTTCGAGAAGAAGCAGTGAAGATTCACTGGAAGAGGAAGGAAGAAGTTTGAGGGACCTTAGACATGAATTGAAGGACGTCCAAGAAAGATTCCGAAAGGCGATGATCACTAATGCCCAACTCGACAATGAACGTGCATCACAAACATATCAAATAGATTTACTAAAGGACATGCTGGAAGAGATGGCGGAATCCTATGCGCAACTGCAACGTGAACACCGCGAGAAGACGAGAGCGCATGATGCACTTAAGCGTCAAAATGATAAGCTTACCGAAGAACTAAAGTTGACACAAGGGCAACTTACCGAACGAGATACGCTGATCGCTGAAAATGGATTAGTAATAATTGTAGTTGAAAATGAGGATGGCAGCGATGCCAAACGCGTTCTAgtctcaaatgaaaatgctcAGCTCCTAAGCAGCATGGAAGGTTCGATAGatGCTCGGCTTAAAAAAATCACCGAAGAAAAACGTGAACTTGAAGGAGAAGTTCAGAAGCTTCAACAGCAGTTAAACGATATAAAGACGAGAGGAGGAAGGCGATCGAGTTCTCTCAACGGTGTATTGGATGACGACGACTACGAAGATGCGCAACgCGAAGCAAATAAAGCAATCAACGACTTCAAGTATCGACTTCAGAAATCCGAACAAGAGATTGCAAGTCTTCAAGCTAGCTTAGCTCGTTCCGAGACTCAGGTTATTCGTTATAAAAGCACTGCGGACGCAGCTGAGAAAGCTGAAGCTGATCTGAAGTCCGAGCGAAGGAAACTTCAGCGAGAGAATCGCGAGGCATTAGAGCGACTCGAGGAACTTGAGACAGCGAACAATCATCTTCTTAAGCGACTTGACAAGTTGAAGAACAGTAAAAGCCAGCTGTTCAAAGAGCTTTGA
- Protein Sequence
- MDSPGAGGRRRGTTRVSAEDQALDQIAKENDDDNESSGELFDSSDKLEIDESAKRNSLLIVEEKDLEMDAAEDQNNNNSESNHRLSLHVGSDEENSNEAINRTIIRIGSNDSSCDFGEAETNAEKPHEAINHEIGDNAREKYPDDDEGIVDILGQIDILAEARLAAKRQARAEAREIRMRELDRQQKELEQNADRVYDMQQSEVLSTPRSRLIVNNHTTAIRGNSMSSRRSSEDSLEEEGRSLRDLRHELKDVQERFRKAMITNAQLDNERASQTYQIDLLKDMLEEMAESYAQLQREHREKTRAHDALKRQNDKLTEELKLTQGQLTERDTLIAENGLVIIVVENEDGSDAKRVLVSNENAQLLSSMEGSIDARLKKITEEKRELEGEVQKLQQQLNDIKTRGGRRSSSLNGVLDDDDYEDAQREANKAINDFKYRLQKSEQEIASLQASLARSETQVIRYKSTADAAEKAEADLKSERRKLQRENREALERLEELETANNHLLKRLDKLKNSKSQLFKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -