Sory000217.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- ZFY
- Assembly
- GCA_002938485.2
- Location
- NW:278532-281170[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.0062 45 4.0 0.0 23 44 138 159 131 166 0.80 2 6 0.019 1.4e+02 2.4 0.4 21 46 194 219 186 224 0.83 3 6 0.00071 5.1 7.0 0.0 21 45 253 277 243 284 0.89 4 6 0.00057 4 7.3 0.1 20 44 308 332 301 339 0.88 5 6 0.037 2.6e+02 1.5 0.1 21 43 365 387 357 392 0.76 6 6 0.0018 13 5.7 0.1 16 44 387 416 376 425 0.81
Sequence Information
- Coding Sequence
- ATGTGTGTTGTGTGTACTAATGCAATTGAATCTGCTAACAAATTTATACTCATGTGTATATCATCagataaacttttaaaaaaagagaaaacgATAAGAGAATTTAGAAAGATCGAAGAGGAAGCCTTACTGGATGAAAATGATATTAATGATTCAATATGGGGTGATAAATGTGAAGATAATAGTCTTTCAATAAAATGTGAAGAACAGAATATAGAATCTTGTTCAGAAAACAGTCTAAAAGACTTATCAGATTCTGATTTGGATGATAAAGCGGAGCCTATTTTATACTCGTCTGAAATATCCCAGCTAGAAGTACCCAtaagagaaaaatataaatgtgaAAAATGTTTAATGACTTTCAGCAATAAAACAAAGTTCTTGGGACATCAGAAAACTCATGATGATACAAAACCTTTTAAGTGTGATATATGTtatcaaagttttttaaaagaaGTACACTTAAAAGTCCATTTAAGATCTCATGCTAAATTGGAAGAGAAGAAGTTTCAGTGTGGAGTGTGTGGAAAGCAATTCATATTTGCCTATTTGCTGAAACAACATGAATATAGACATTCTGAGAGAAAACCGTTTCCTTGCACAAAATGTTCTAAAGggtGCCTAACATCAGAAAGTTTACGTCGTCATATGAGGATACAtgacaaaaattatattaagaAAGCATATATTTGTACAATCTGTAGAAAAGAATTTCCATATCCAAGCTCCCTATCAGAACATATGAAGCTACACACTGGTGAAAAGCCTCATCTTTGCTCCATATGTGGTAAAGGTTTTCGCCAGAGCGGAGCTTTACATTACCATCAAAAAATTCATACAGGCCTCAAGTCTTTTAAATGCAAAATTTGTCAGGAATGGTTTATGTCACAGAGCATTTTGAAAGTTCATATGAGAAAACACACCAATGAGAGGCCTTTTGTATGTGATTGCTGTGGTATGTCTTTTAGGCaatcaaatgacttaaaaagtcaCACTCGTACTCATACAGGAGAAAAGTCAGTTTTATGTACAGTTTGTGGCAAGAAACTAGCTACTACTGGACAATTAACAATACATTTAAGATCACACACTGGCGAGAAACCGTACAAATGCAAAATCTGTTCGAAGGCATTCACTACTAATTCAGTGTTAAAAAAACATAGTAGAGTTCACACTGGAGAACGTCCATATATTTGTACTGTATGTAATAAGGGTTTTAGTCAAAGTTCTACATTAAAAACACATGCTCTGATGCACAGgaataaccACCCACAAAACAGCAAGAGAcaagtaaaattaaaaagcgcTAAAAGCAAAAGAAATGAATCAGAAGATAGAGCCactgtaaaaattaatttagaagaaaaggaAACTAGTGATATGAAAACTGAATTTACTGTTATTCCTGCTCCAATTCCATATGTAACAAGTTaa
- Protein Sequence
- MCVVCTNAIESANKFILMCISSDKLLKKEKTIREFRKIEEEALLDENDINDSIWGDKCEDNSLSIKCEEQNIESCSENSLKDLSDSDLDDKAEPILYSSEISQLEVPIREKYKCEKCLMTFSNKTKFLGHQKTHDDTKPFKCDICYQSFLKEVHLKVHLRSHAKLEEKKFQCGVCGKQFIFAYLLKQHEYRHSERKPFPCTKCSKGCLTSESLRRHMRIHDKNYIKKAYICTICRKEFPYPSSLSEHMKLHTGEKPHLCSICGKGFRQSGALHYHQKIHTGLKSFKCKICQEWFMSQSILKVHMRKHTNERPFVCDCCGMSFRQSNDLKSHTRTHTGEKSVLCTVCGKKLATTGQLTIHLRSHTGEKPYKCKICSKAFTTNSVLKKHSRVHTGERPYICTVCNKGFSQSSTLKTHALMHRNNHPQNSKRQVKLKSAKSKRNESEDRATVKINLEEKETSDMKTEFTVIPAPIPYVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01351995;
- 90% Identity
- iTF_01351995;
- 80% Identity
- iTF_01351995;