Sory011829.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- -
- Assembly
- GCA_002938485.2
- Location
- NW:1931026-1939219[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0097 69 3.4 0.0 17 37 125 145 119 154 0.71 2 4 0.00058 4.2 7.3 0.2 22 48 188 214 179 218 0.83 3 4 1.5e-05 0.11 12.4 0.1 21 52 215 246 211 246 0.88 4 4 0.00072 5.2 7.0 0.1 21 48 243 270 241 275 0.89
Sequence Information
- Coding Sequence
- atggcGAATTATGATGGGGATGATTTTCATCCCTCCATTGAGCCAATGGTTATTATCAATAGCCAAGACGATGAGGAAGAAAACAGCGACTTCAAAGACAATTCTCAACTACCTGCAAATGATAATGACTTTTCAAGTTATGCCAGACCGGAAATATCAATTTTCCCAGTAAAGAAAAACAAGAGGgcaagttttaaaattaaattttttgaaaaacacgtTTCCAATGGAGACATCGGGGAAGGAATGTCAGGTGACGAGGAAGAAAcaaacatgaaaataaaaaataatgttggaACTAGATCTCCCGGAGTAAGAACTCCAGTAAGGTTGATATCCAAAGATGAGGCATTAAATGCTGAAGAAACATATACAAGAAGAAAAAGCAGTCCGTTAGAGAAATGCCCTATCTGTAAAAAATTCTTTAGGAGAATGAAAACACACTTGCTCAAACATGAGATTGTAGAAACTACAATCGGGAATGGTCTTGTCTGTGAAATGTGTTCTAAGGCATTTAACAGCCAAACtAATTTACAAATTCACATGAGAACTCATACTGGACAGAGGCCATATATCTGTGATGTTTGTAATAAATCATTTTCTCAAAGTTGCAATCTAGTCAATCACATGAGGGTTCATACAGgtGAAAAGCCATTTAAGTGTCCGCACTGTGATAGGGCTTTCACACAATCGGGAAATCTGAACAATCATATCAGGTTACATACTGATGAAAAACCCTTCAAATGCCATTTTTGTGAGAAAGCATTTGTTCAAAGTGGAAATCTGAATTCACACATTAGGAACAATCACAGATTCAAAGGATTTGCTCCGATTCAGGGAGAGGTAATGAACAACCGACCATTAAACCGTTAA
- Protein Sequence
- MANYDGDDFHPSIEPMVIINSQDDEEENSDFKDNSQLPANDNDFSSYARPEISIFPVKKNKRASFKIKFFEKHVSNGDIGEGMSGDEEETNMKIKNNVGTRSPGVRTPVRLISKDEALNAEETYTRRKSSPLEKCPICKKFFRRMKTHLLKHEIVETTIGNGLVCEMCSKAFNSQTNLQIHMRTHTGQRPYICDVCNKSFSQSCNLVNHMRVHTGEKPFKCPHCDRAFTQSGNLNNHIRLHTDEKPFKCHFCEKAFVQSGNLNSHIRNNHRFKGFAPIQGEVMNNRPLNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01352073;
- 90% Identity
- iTF_01352073;
- 80% Identity
- iTF_01352073;