Sory013614.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- -
- Assembly
- GCA_002938485.2
- Location
- NW:1678847-1735575[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.26 14 6.1 2.7 1 23 72 94 72 94 0.89 2 14 1.5e-05 0.00077 19.5 3.5 1 23 103 126 103 126 0.95 3 14 0.72 38 4.7 3.1 1 23 142 164 142 164 0.87 4 14 0.00028 0.015 15.4 4.5 1 23 173 196 173 196 0.93 5 14 0.3 15 5.9 3.3 1 23 211 233 211 233 0.88 6 14 1.5e-05 0.00077 19.5 3.5 1 23 242 265 242 265 0.95 7 14 0.00036 0.019 15.1 2.2 1 23 279 301 279 301 0.97 8 14 0.0042 0.22 11.8 3.9 1 23 310 333 310 333 0.93 9 14 0.00031 0.016 15.3 0.9 2 23 347 368 346 368 0.95 10 14 2.8e-05 0.0014 18.6 2.9 1 23 377 400 377 400 0.97 11 14 0.0091 0.48 10.7 0.4 2 23 415 436 414 436 0.95 12 14 0.00015 0.008 16.3 3.0 1 23 445 468 445 468 0.97 13 14 0.0061 0.32 11.2 0.3 2 23 483 504 482 504 0.96 14 14 2.9e-05 0.0015 18.6 2.3 1 23 513 536 513 536 0.97
Sequence Information
- Coding Sequence
- ATGAATCAAACTGTGGAACATGTTAAACAAGAAAATTATGTTTCggaagaaaatataaatggagTATGGTCAGATAACAAGCTAGAATTTGGGATTCAGACTGATGAACTTACCAACACAGACGATAATAAACATGAAATATATGTTCAAACCAAGGTAGAATCTGATGATAATGAGAtaACGAAGGAATTGAAGGAACCGCAGAAAAAGGTCTATAGATGTGCCGTATGCGGCTGTCAAAAACAATATAGATCAGATTTTGACCGGCATATGAAAGTTCACATGGCACCGGGAGAACGACAGTTGTTTGCATGTCCACATTGtgacaaaaaatataagaaaaaagacAGCTTAAAATACCACCTTAGGGATAATCATATTGATTCtagaacGAAGGAATTGAAGGAACCGCAGAAAAAGGTCTATAAATGTGCCGTATGCGGCTGTCAAAAACAATATAGATCAAGTTTTGACCAGCATATGAAAGTTCACATGGCACCGGAAGAACGGCAGCTGTTTGCTTGTGTGCACTGTGGCAACAAATATAGTACAAAATCCAACTTGAAACATCACCTTGATAATAAGCACATTGATtccagaacGAAGGAATTGAAGGAATCGCAGAAGATCTATAAATGTGCCGTATGCGGCTGTCAAAAACAATATAGATCAAGTTTTGACCGGCATATGAAAGTTCACATGGCACCGGGAGAACGACAGTTGTTTGCATGCCCACACTGtgacaaaaaatataagaaaaaagacAGTTTAAAATACCACCTTAGGGATAATCATATAGATTCTGGGCTAAAGGGGGCGCAGCAAACGGTCTATCATACATGTTCCGAATGTGACTACCAAACACCATACAGGTCAAATCTTAGACAACACGAGAAAGTTCACTTGGCACCGGAAGAACAACAGATGTTTGCTTGTGCGCACTGTGATGTAAAATATAGAAGAAAACATAGCTTACAATACCACCTTGATAATAATCATACGGATTTGAGATCGAAGGAAGTGCAGAAAAAGGTTAGCACATGCTCCATATGTGGCTACCGAACACGACATTTGCCAAACCTTAGACGACACGAGGCAGTGCATTTAGCACCGGAAGCACGACAACTGTTCCCTTGTGTGCATTGTGACAAAACATATAGGAATAAATTCACCTTACAACTTCACCTCAACCGTGATCATATTGAGTCCAGTGGATCGAAGGAAGTGCAGAAAAAGGTCAGCACATGTTCCATATGTGGCTACCAAACACTACGTTCGACAAATTTAAGACGACACGAGGCAGTGCATTTGGCACTGGAAGCACGACAGTTGTTCCCTTGTGTGCATTGtgacaaaatatataaacataaaatCAGCTTACAACTTCACCTCAATCGTGATCATATGGAGTCCAGtAGGTCGAAGGAAGTGCCGAGAAAGGTCAGCACATGTTCCATATGCGGCTACCAAACAGTATATTTGCCAAACTTTAGACGACACAAGGCAGTGCATTTGGCACCGGAAGCACGACAGTTGTTCCCTTGTGTGCATTGTGACaaaatatataagaaaaaaagCACCCTACAACTTCACCTCAATCGTGATCATATTGAATCCAGAAATGCTGATGATATACCTATTGAAGTGATATCGGAAGAttctttaaaaattgaaattgatGATCACACACCGCTTTCGGATGACTTTAAATATGCTGATTCTGTAGTTTTAACTGACGAAGTGAAATCGGAATGTTCTGTAAAAACTGAAATCGATGATCACGCTCTGCTTTTAGATGACTTTAATGAAGTTAAACCAGAATTTGTGAAAATTGAAACTGATAATGACCCTCCGATTTTGAATGAAGACATGCATGATGACTTTAAAAGTACCGAAGATCTCTCTATAACTAAGAAACTGAAgttagattttataaaaatggaACCTGATGATAGATAG
- Protein Sequence
- MNQTVEHVKQENYVSEENINGVWSDNKLEFGIQTDELTNTDDNKHEIYVQTKVESDDNEITKELKEPQKKVYRCAVCGCQKQYRSDFDRHMKVHMAPGERQLFACPHCDKKYKKKDSLKYHLRDNHIDSRTKELKEPQKKVYKCAVCGCQKQYRSSFDQHMKVHMAPEERQLFACVHCGNKYSTKSNLKHHLDNKHIDSRTKELKESQKIYKCAVCGCQKQYRSSFDRHMKVHMAPGERQLFACPHCDKKYKKKDSLKYHLRDNHIDSGLKGAQQTVYHTCSECDYQTPYRSNLRQHEKVHLAPEEQQMFACAHCDVKYRRKHSLQYHLDNNHTDLRSKEVQKKVSTCSICGYRTRHLPNLRRHEAVHLAPEARQLFPCVHCDKTYRNKFTLQLHLNRDHIESSGSKEVQKKVSTCSICGYQTLRSTNLRRHEAVHLALEARQLFPCVHCDKIYKHKISLQLHLNRDHMESSRSKEVPRKVSTCSICGYQTVYLPNFRRHKAVHLAPEARQLFPCVHCDKIYKKKSTLQLHLNRDHIESRNADDIPIEVISEDSLKIEIDDHTPLSDDFKYADSVVLTDEVKSECSVKTEIDDHALLLDDFNEVKPEFVKIETDNDPPILNEDMHDDFKSTEDLSITKKLKLDFIKMEPDDR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01351968;
- 90% Identity
- iTF_01351968;
- 80% Identity
- iTF_01351968;