Basic Information

Insect: Sitophilus oryzae
Gene Symbol: -
Assembly: GCA_002938485.2
Location: NW:1678847-1735575[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.7 2.6e+02 1.4 1.3 13 39 68 91 63 100 0.78

2 13 0.0014 0.52 10.1 1.2 14 43 100 126 92 127 0.87

3 13 1.3 4.9e+02 0.6 2.2 13 33 138 155 134 165 0.74

4 13 1.1e-05 0.004 16.8 3.6 11 43 167 196 162 197 0.88

5 13 1.2 4.4e+02 0.7 2.0 13 39 207 230 202 234 0.73

6 13 0.0013 0.49 10.1 1.1 15 43 240 265 232 266 0.87

7 13 0.0034 1.3 8.8 1.1 9 43 302 333 300 334 0.88

8 13 1.2 4.5e+02 0.7 0.3 13 25 342 354 337 364 0.71

9 13 0.026 9.6 6.0 0.3 11 43 371 400 367 401 0.78

10 13 0.0029 1.1 9.0 0.7 13 38 410 432 406 432 0.89

11 13 0.057 22 4.9 0.6 18 43 446 468 438 469 0.78

12 13 0.16 59 3.5 0.1 10 38 477 500 475 500 0.79

13 13 0.00065 0.24 11.1 0.4 11 43 507 536 503 537 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.7	2.6e+02	1.4	1.3	13	39	68	91	63	100	0.78
2	13	0.0014	0.52	10.1	1.2	14	43	100	126	92	127	0.87
3	13	1.3	4.9e+02	0.6	2.2	13	33	138	155	134	165	0.74
4	13	1.1e-05	0.004	16.8	3.6	11	43	167	196	162	197	0.88
5	13	1.2	4.4e+02	0.7	2.0	13	39	207	230	202	234	0.73
6	13	0.0013	0.49	10.1	1.1	15	43	240	265	232	266	0.87
7	13	0.0034	1.3	8.8	1.1	9	43	302	333	300	334	0.88
8	13	1.2	4.5e+02	0.7	0.3	13	25	342	354	337	364	0.71
9	13	0.026	9.6	6.0	0.3	11	43	371	400	367	401	0.78
10	13	0.0029	1.1	9.0	0.7	13	38	410	432	406	432	0.89
11	13	0.057	22	4.9	0.6	18	43	446	468	438	469	0.78
12	13	0.16	59	3.5	0.1	10	38	477	500	475	500	0.79
13	13	0.00065	0.24	11.1	0.4	11	43	507	536	503	537	0.85

Sequence Information

Coding Sequence: ATGAATCAAACTGTGGAACATGTTAAACAAGAAAATTATGTTTCggaagaaaatataaatggagTATGGTCAGATAACAAGCTAGAATTTGGGATTCAGACTGATGAACTTACCAACACAGACGATAATAAACATGAAATATATGTTCAAACCAAGGTAGAATCTGATGATAATGAGAtaACGAAGGAATTGAAGGAACCGCAGAAAAAGGTCTATAGATGTGCCGTATGCGGCTGTCAAAAACAATATAGATCAGATTTTGACCGGCATATGAAAGTTCACATGGCACCGGGAGAACGACAGTTGTTTGCATGTCCACATTGtgacaaaaaatataagaaaaaagacAGCTTAAAATACCACCTTAGGGATAATCATATTGATTCtagaacGAAGGAATTGAAGGAACCGCAGAAAAAGGTCTATAAATGTGCCGTATGCGGCTGTCAAAAACAATATAGATCAAGTTTTGACCAGCATATGAAAGTTCACATGGCACCGGAAGAACGGCAGCTGTTTGCTTGTGTGCACTGTGGCAACAAATATAGTACAAAATCCAACTTGAAACATCACCTTGATAATAAGCACATTGATtccagaacGAAGGAATTGAAGGAATCGCAGAAGATCTATAAATGTGCCGTATGCGGCTGTCAAAAACAATATAGATCAAGTTTTGACCGGCATATGAAAGTTCACATGGCACCGGGAGAACGACAGTTGTTTGCATGCCCACACTGtgacaaaaaatataagaaaaaagacAGTTTAAAATACCACCTTAGGGATAATCATATAGATTCTGGGCTAAAGGGGGCGCAGCAAACGGTCTATCATACATGTTCCGAATGTGACTACCAAACACCATACAGGTCAAATCTTAGACAACACGAGAAAGTTCACTTGGCACCGGAAGAACAACAGATGTTTGCTTGTGCGCACTGTGATGTAAAATATAGAAGAAAACATAGCTTACAATACCACCTTGATAATAATCATACGGATTTGAGATCGAAGGAAGTGCAGAAAAAGGTTAGCACATGCTCCATATGTGGCTACCGAACACGACATTTGCCAAACCTTAGACGACACGAGGCAGTGCATTTAGCACCGGAAGCACGACAACTGTTCCCTTGTGTGCATTGTGACAAAACATATAGGAATAAATTCACCTTACAACTTCACCTCAACCGTGATCATATTGAGTCCAGTGGATCGAAGGAAGTGCAGAAAAAGGTCAGCACATGTTCCATATGTGGCTACCAAACACTACGTTCGACAAATTTAAGACGACACGAGGCAGTGCATTTGGCACTGGAAGCACGACAGTTGTTCCCTTGTGTGCATTGtgacaaaatatataaacataaaatCAGCTTACAACTTCACCTCAATCGTGATCATATGGAGTCCAGtAGGTCGAAGGAAGTGCCGAGAAAGGTCAGCACATGTTCCATATGCGGCTACCAAACAGTATATTTGCCAAACTTTAGACGACACAAGGCAGTGCATTTGGCACCGGAAGCACGACAGTTGTTCCCTTGTGTGCATTGTGACaaaatatataagaaaaaaagCACCCTACAACTTCACCTCAATCGTGATCATATTGAATCCAGAAATGCTGATGATATACCTATTGAAGTGATATCGGAAGAttctttaaaaattgaaattgatGATCACACACCGCTTTCGGATGACTTTAAATATGCTGATTCTGTAGTTTTAACTGACGAAGTGAAATCGGAATGTTCTGTAAAAACTGAAATCGATGATCACGCTCTGCTTTTAGATGACTTTAATGAAGTTAAACCAGAATTTGTGAAAATTGAAACTGATAATGACCCTCCGATTTTGAATGAAGACATGCATGATGACTTTAAAAGTACCGAAGATCTCTCTATAACTAAGAAACTGAAgttagattttataaaaatggaACCTGATGATAGATAG
Protein Sequence: MNQTVEHVKQENYVSEENINGVWSDNKLEFGIQTDELTNTDDNKHEIYVQTKVESDDNEITKELKEPQKKVYRCAVCGCQKQYRSDFDRHMKVHMAPGERQLFACPHCDKKYKKKDSLKYHLRDNHIDSRTKELKEPQKKVYKCAVCGCQKQYRSSFDQHMKVHMAPEERQLFACVHCGNKYSTKSNLKHHLDNKHIDSRTKELKESQKIYKCAVCGCQKQYRSSFDRHMKVHMAPGERQLFACPHCDKKYKKKDSLKYHLRDNHIDSGLKGAQQTVYHTCSECDYQTPYRSNLRQHEKVHLAPEEQQMFACAHCDVKYRRKHSLQYHLDNNHTDLRSKEVQKKVSTCSICGYRTRHLPNLRRHEAVHLAPEARQLFPCVHCDKTYRNKFTLQLHLNRDHIESSGSKEVQKKVSTCSICGYQTLRSTNLRRHEAVHLALEARQLFPCVHCDKIYKHKISLQLHLNRDHMESSRSKEVPRKVSTCSICGYQTVYLPNFRRHKAVHLAPEARQLFPCVHCDKIYKKKSTLQLHLNRDHIESRNADDIPIEVISEDSLKIEIDDHTPLSDDFKYADSVVLTDEVKSECSVKTEIDDHALLLDDFNEVKPEFVKIETDNDPPILNEDMHDDFKSTEDLSITKKLKLDFIKMEPDDR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01352030;
90% Identity: iTF_01352030;
80% Identity: iTF_01352030;