Sory002011.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- -
- Assembly
- GCA_002938485.2
- Location
- NW:366532-380229[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0031 0.16 12.2 3.2 1 23 186 210 186 210 0.95 2 10 8.2e-06 0.00043 20.3 1.4 2 23 218 240 218 240 0.96 3 10 1.4e-08 7.4e-07 29.0 1.5 1 23 247 269 247 269 0.97 4 10 6.4e-07 3.3e-05 23.8 0.4 1 23 275 297 275 297 0.98 5 10 3.6e-05 0.0019 18.3 0.3 1 23 303 325 303 325 0.95 6 10 8.1e-05 0.0042 17.1 2.7 1 23 331 353 331 353 0.98 7 10 5.3e-09 2.8e-07 30.3 2.0 1 23 359 381 359 381 0.98 8 10 6.5e-07 3.4e-05 23.7 0.9 1 23 387 409 387 409 0.98 9 10 4.6e-06 0.00024 21.1 2.2 1 23 415 437 415 437 0.98 10 10 1.6e-05 0.00083 19.4 0.6 3 23 445 465 443 465 0.97
Sequence Information
- Coding Sequence
- ATGGCTTGTGCAACTATAAACTTTGAGAAAGTATGTAGAACATGTCTTTCTCAATCATCTGAAATGAGGTCTTTATTTAGTACTGAGTGTACAAATGAAAGTAACATTAAACTTTCCGATATGTTAAATTCATGTACAAGTTTGCAGGTGATCGAAAATGATGGCTTACCTGGACAAGTTTGTTCCAAGTGTGTCGATTCCATTATTAGTTCTTGTTTGTTCGAACAACAATGTTGCAAGTCAGATTATACCTTGAAAGAACTCTTGTCCCAGGAAGTGGGCTCTACATTAGTTGAATTAAGACCCCTAGATGCATTACTAGGACAGACCTTGAATGCTCCATTAATTATAAGCGATTTATGTGATAATTTTCAGCAAGAATTTGGTGCCCCTTTACATAGTATAGATAATTCAAATAGCCTGCAGTCAGAAGAAAATGTGTCAGTTAATAATAGTGGGGAATTAAAGCATCTTGAATCTTTTTCTGAATTAGGAAATGAAAATAATTGTGCTTTAAATGCAAGAGTAGATGAAGATGAAACAAAGCAGCCTTTGTTTGCTTGCGAGACTGTTGGATGTTTTTCTTGTTTTACCACAGAGAAGGATTTGAAGAAACATAAAAGGAGTCATTCTCCGTTACCAATAATTCGTGTATGTAAAAAATGCAATCAGAAATTCTCCAGTGCTAGCACATTATCTAGACATTTGTCAACAGTTCATCAGGAAGGCAGTAAAAGGCATATGTGCAATGAATGCGGAAAAGGATTtgctagGTCTGATGATTTAAAAAGACATTTAAGAACGCATACAGGAGAGAAACCATTTCAGTGTAAACTATGTGGAAAAGCCTTTGCCCAGTCATCCAAgTTAGTGGAACATACAAGAGCTCATTCAAACGTTAAAGATTTTCTTTGTTTAGTATGTGGTAAAGCTTTTGCAAGATATACTAGTTTAATGGCACATAACAAAACACATACTGGCATCAAGACTCACGAATGTAGGGAATGTGGAAAAATGCTGTGCGGTTCAGGTTCATTACAAATGCATATGAAGACACACACAGGCGAGCGTAATTTTATGTGCAATTTTTGCGATAAGACTTTTACATCTCAAAGTAATTTGACCATTCATATAAGGACTCACACAGGTGAGAAACCTTATATTTGCAAAACGTGTGGAAAAGGTTTTCCTGATCATTCTCGTTTAAATGTTCATATGAGGATTCACAGcgGTGAAAAACCCTATATATGCTCATATTGTAACAGAGGATGTGTTAGTTCTTCTCAGTTAAAGAAACACGTCCGTATCCATACAGGAGAAAAGCCCTATGGTTGTAACTTGTGCTCTAAAAAGTTTAGTAGAGGAGAAGATTTAAAAGTACATATGAAAATTCATAAAGGCAACACCTTTTTTCATATGGGTCATTTTAGGTGA
- Protein Sequence
- MACATINFEKVCRTCLSQSSEMRSLFSTECTNESNIKLSDMLNSCTSLQVIENDGLPGQVCSKCVDSIISSCLFEQQCCKSDYTLKELLSQEVGSTLVELRPLDALLGQTLNAPLIISDLCDNFQQEFGAPLHSIDNSNSLQSEENVSVNNSGELKHLESFSELGNENNCALNARVDEDETKQPLFACETVGCFSCFTTEKDLKKHKRSHSPLPIIRVCKKCNQKFSSASTLSRHLSTVHQEGSKRHMCNECGKGFARSDDLKRHLRTHTGEKPFQCKLCGKAFAQSSKLVEHTRAHSNVKDFLCLVCGKAFARYTSLMAHNKTHTGIKTHECRECGKMLCGSGSLQMHMKTHTGERNFMCNFCDKTFTSQSNLTIHIRTHTGEKPYICKTCGKGFPDHSRLNVHMRIHSGEKPYICSYCNRGCVSSSQLKKHVRIHTGEKPYGCNLCSKKFSRGEDLKVHMKIHKGNTFFHMGHFR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01351972;
- 90% Identity
- iTF_01351972;
- 80% Identity
- iTF_01351972;