Sory002011.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- -
- Assembly
- GCA_002938485.2
- Location
- NW:366532-380229[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 4.2e-05 0.016 14.9 0.3 18 44 218 241 212 241 0.93 2 9 0.0061 2.3 8.0 0.2 18 41 248 268 243 270 0.88 3 9 0.031 12 5.7 0.4 17 34 275 289 268 298 0.75 4 9 0.15 57 3.5 0.5 18 38 304 321 288 331 0.72 5 9 5.8 2.2e+03 -1.5 3.4 18 30 332 344 324 354 0.78 6 9 0.0021 0.78 9.5 1.4 16 41 358 380 349 382 0.85 7 9 2 7.7e+02 -0.1 0.6 18 28 388 398 381 408 0.73 8 9 1.1 4e+02 0.8 3.7 10 40 409 435 400 438 0.77 9 9 0.00052 0.2 11.4 0.7 1 29 428 455 428 466 0.83
Sequence Information
- Coding Sequence
- ATGGCTTGTGCAACTATAAACTTTGAGAAAGTATGTAGAACATGTCTTTCTCAATCATCTGAAATGAGGTCTTTATTTAGTACTGAGTGTACAAATGAAAGTAACATTAAACTTTCCGATATGTTAAATTCATGTACAAGTTTGCAGGTGATCGAAAATGATGGCTTACCTGGACAAGTTTGTTCCAAGTGTGTCGATTCCATTATTAGTTCTTGTTTGTTCGAACAACAATGTTGCAAGTCAGATTATACCTTGAAAGAACTCTTGTCCCAGGAAGTGGGCTCTACATTAGTTGAATTAAGACCCCTAGATGCATTACTAGGACAGACCTTGAATGCTCCATTAATTATAAGCGATTTATGTGATAATTTTCAGCAAGAATTTGGTGCCCCTTTACATAGTATAGATAATTCAAATAGCCTGCAGTCAGAAGAAAATGTGTCAGTTAATAATAGTGGGGAATTAAAGCATCTTGAATCTTTTTCTGAATTAGGAAATGAAAATAATTGTGCTTTAAATGCAAGAGTAGATGAAGATGAAACAAAGCAGCCTTTGTTTGCTTGCGAGACTGTTGGATGTTTTTCTTGTTTTACCACAGAGAAGGATTTGAAGAAACATAAAAGGAGTCATTCTCCGTTACCAATAATTCGTGTATGTAAAAAATGCAATCAGAAATTCTCCAGTGCTAGCACATTATCTAGACATTTGTCAACAGTTCATCAGGAAGGCAGTAAAAGGCATATGTGCAATGAATGCGGAAAAGGATTtgctagGTCTGATGATTTAAAAAGACATTTAAGAACGCATACAGGAGAGAAACCATTTCAGTGTAAACTATGTGGAAAAGCCTTTGCCCAGTCATCCAAgTTAGTGGAACATACAAGAGCTCATTCAAACGTTAAAGATTTTCTTTGTTTAGTATGTGGTAAAGCTTTTGCAAGATATACTAGTTTAATGGCACATAACAAAACACATACTGGCATCAAGACTCACGAATGTAGGGAATGTGGAAAAATGCTGTGCGGTTCAGGTTCATTACAAATGCATATGAAGACACACACAGGCGAGCGTAATTTTATGTGCAATTTTTGCGATAAGACTTTTACATCTCAAAGTAATTTGACCATTCATATAAGGACTCACACAGGTGAGAAACCTTATATTTGCAAAACGTGTGGAAAAGGTTTTCCTGATCATTCTCGTTTAAATGTTCATATGAGGATTCACAGcgGTGAAAAACCCTATATATGCTCATATTGTAACAGAGGATGTGTTAGTTCTTCTCAGTTAAAGAAACACGTCCGTATCCATACAGGAGAAAAGCCCTATGGTTGTAACTTGTGCTCTAAAAAGTTTAGTAGAGGAGAAGATTTAAAAGTACATATGAAAATTCATAAAGGCAACACCTTTTTTCATATGGGTCATTTTAGGTGA
- Protein Sequence
- MACATINFEKVCRTCLSQSSEMRSLFSTECTNESNIKLSDMLNSCTSLQVIENDGLPGQVCSKCVDSIISSCLFEQQCCKSDYTLKELLSQEVGSTLVELRPLDALLGQTLNAPLIISDLCDNFQQEFGAPLHSIDNSNSLQSEENVSVNNSGELKHLESFSELGNENNCALNARVDEDETKQPLFACETVGCFSCFTTEKDLKKHKRSHSPLPIIRVCKKCNQKFSSASTLSRHLSTVHQEGSKRHMCNECGKGFARSDDLKRHLRTHTGEKPFQCKLCGKAFAQSSKLVEHTRAHSNVKDFLCLVCGKAFARYTSLMAHNKTHTGIKTHECRECGKMLCGSGSLQMHMKTHTGERNFMCNFCDKTFTSQSNLTIHIRTHTGEKPYICKTCGKGFPDHSRLNVHMRIHSGEKPYICSYCNRGCVSSSQLKKHVRIHTGEKPYGCNLCSKKFSRGEDLKVHMKIHKGNTFFHMGHFR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01351988;
- 90% Identity
- iTF_01351988;
- 80% Identity
- iTF_01351988;