Sory000558.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- TIGD6
- Assembly
- GCA_002938485.2
- Location
- NW:1391528-1450907[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-33 5.1e-30 103.6 0.2 4 78 125 199 122 200 0.97 2 2 2.4e-22 1.1e-18 67.2 0.4 30 78 671 719 659 720 0.96
Sequence Information
- Coding Sequence
- ATGGAAAATGAACAATGGTCGGCCGATTACCAACAATCTGTGACGGCAGGTATTGAAAGGCCCACCAGCAATCTCAACAATGGTAACATCAAAATCCTCGCCGCGGAAAACGACCTGCAAAATTCCCTCATCAAGCAGGATCCGGATtcgaaaactatttttccaGCAGAGATCAAATGCGAGAATGGCCAGACCAGCGTACTTAGTGAGAAGTCTAAACAGGCGATACAGCTCATCCTGGCGCAAATAAAGACGCTATCGCCAAACGAGAAGTACCTTTTCTATTTGAAGTTGCCTTCGGAGATAACGGACATCATCGACCCGTTTAGACAGCCTTTGAATCCACTGGGCAGCCGGTCGGAGATCTCCAGGACGATAGTCTGGATACAGACGCACCTGGAGGAGGATCAAAACATTTCCCTGCCCAAGAAGGAGGTCTACAATGAATATGAgcaGTACTGTGATAAGAACACCATTAAGCCCTTATCGCAAGCAGATTTCGGCAAGGTTATGAAACAGGTGTTCCCCAAAGTGAGAGCTCGAAGATTAGGCCAGAGAGGCAATTCCAAGTACTGCTACTCGGGGCTCAGGCGAAGGGTGAACTTAAAACCGCCCTTGTTGCCCGATATATCAGACAAACCTTTGtctACAGAGGCTCCGATTACGCAGTCCAACTTGACGTACGCTGCCTGGTTAATAGTGAAAGATTGGGCTCAGCAACAGCTGGGGGTGCATTTTACCTCCCTTCAGTCATTGGCCAATTACTTAGTGAGACATTGTTCGATCGGTTCCGGTTCCGAAGCTGCCAGCAAGCTGACTTCCAACAGCGAATCACAAGGAAAAGAGAAATTAAATATTGTCGCGGAAAGTGAAAAATATAACAGCAGTGCTCGAAAGTTGGCGGAAAAGTTTGGTGTTGGAAGAACGCAAGTGAAcgacattttaaaaaacaaagtggaattaaaaaaaatgtttgaagaaGAAGGATGCAatgcagataaaaaacgaaagtTTCCTAAAACAGAAGGATTTGCAATCGATCAACTAGTTTACGAATGGTTTTGTAAGGCAAGGAACAAAAACATACCCATATCGGGAACCTTAATTCGGGAAAAAGCTCTTGAGGTATCTACATCCTTGAAACTTAGTGAATTTAAGGCTTCAACTGGCTGGTTAAATAAGTTTTGCAAGAGACATAATATTAACTTCAAAACAATTTGTGGTGAGTCTGCAGATGTGGATGAAGTGACTGTTGAAGActggaaaacaaaattaacagCAATCATTAAGGAATACGACACTAAAGACATTTTTAATGCAGACGAAACAGGGCTTTATTATATGGCAATGCCAAACAAAACCTTTGCTTTAAAGAATGATAAATGTGCTGGCAAAAAATCAGCTAAACAACGAGTGACACTGCTTTTCTGTTGCAGCATGCATGGTGAGAAGGAAAATCCGCTAGTTATAGAAACGATGGAAAAGGCTAAAGAGAGCATAAATTTGGCAAGTACTATGGTGTGGATAAGTACAGCATGGAAAAATGTTACATCGAacactataaaaaaatgtttccaaaaaGCGGGATTTGCAACCGTCAAAGGGGACGATGCATTTGACGAAGAGGACGACATTCCTTTAAGTCAGTtatcttcaattttaaaaaacatgccaggaaGTCCAGATCTTAAAGAATATCTGACAGTCGATTCAGATGTCCCTACGGAAAATCCTAGTTTAGAGATGCAGGGAATAATCCAGGAATTTACAAACAACAAGGACAGACAGGACTCCACTCAAGCCGAAGAGGAAGAAGATGAAGGCCAAGACATTCTGTGTTCATCTATAAATAATATGAGTGAAGTATGTGAAAAATTAAGAGACATTCAGAATTTTTTGGTGATTCAAAACAAAGACGAACTAGCGGTTGATATTGCCCATACTTTGATGAAATTTGAAagtgaaattacaaaaatcaaaattaaaaatttaaagcaGACTACCATTAATCAgcaGTACTGTGATAAGAACACCATTAAGCCCTTATCGCAAGCAGATTTCGGCAAGGTTATGAAACAGGTGTTCCCCAAAGTGAGAGCTCGAAGATTAGGCCAGAGAGGCAATTCCAAGTACTGCTACTCGGGGCTCAGGCGAAGGGTGAACTTAAAACCGCCCTTGTTGCCCGATATATCAGACAAACCTTTGtctACAGAGGCTCCGATTACGCAGTCCAACTTGACGTACGCTGCCTGGTTAATAGTGAAAGATTGGGCTCAGCAACAGCTGGGGGTGCATTTCACCTCCCTTCAGTCATTGGCCAATTACTTAGTGAGACATTGTTCGATCGGTTCCGGTTCCGAAGCTGCCAGCAAGCTGACTTCCAACAGCGAATCACAAGGAAAAGAAGGTGATGAAGCAGTATGCAAAAACAACAACAAGCATAGGGAGATGCAAATCCAGTTACAAAAGAAAATTCAGCAGAGGAATGAAGGCAAAGAAAGGAAAAGAAAAATTCCGCCTGCTGTAAAATCGGAACCGAAACCCGGCGTGAAAAAGTGCCGATCCCAGAGCGTCCCCGCCTCGTCAGTGGCCTCCGCGCTGTCGCAGGATTCGATCAGCAGCGTAGGAGCGAACGGGGGGCTAACGGGCAGTGGCGCCGGCGCCGGGGGCCTGACCAGCGGCGGCGAGTGCAGCACGGCCAGCAGCAGTTGCGGCAGCAACAGCGTCAGTCCGACTCAGGGCAGAGCAACCATCTGTGATAAACCAGAGTTCACTCAATTAACGGCGTTACCTGACTTCAATAGCTTTCAGAAACCGGTGCTGGGAGAAGCGGCGGCCTGCAACGGTACCGGTGTGGGGCAGGAGAAGACCAATCCGTTAGTCTCGGGGATCCTAGGCAAGAAGTTGCCCATACCCAGGCTGCACGGCGGCGGCAACAACGGCACCACTACCAGCGCCTCGCACACCGCGCAGGCGAAAACGCCGCCGCAGCAGCAGCGCAAGCCCAAGTACAAAGTGATCCAACCCAGACTGCAACCATGTGATATCGCAACGTACAATTCGTCGGCGGCAGCGCAGACCACCGTCACCACCCAGACGGAGACCGTCGCCTCGCTGGCCGACACCAGATCTCAGCAAGTTCACTGCGGTGCGAAAGAAGATGATAGTTCTAAAGCTAAGCCTATTGATAACAAGTATGAGGATAATTTGAATGAATGTGATGATGATGAGGATTTTCCATTAACGCGGGAAAGGCTCGAGAGCGTCAGCAATGTCGATAAAGATGCCATGGACGAATATTTAGGAACGAACAATAGCCAACACGAGGAGGAACTCTCGAAATACTTCAACGGCAACGAAGAGAGCGATCCAACCCCCCGAAACCGAGAGCAACTCTCCACATTGCGACAGCTTCTCGAGCAGAACGGCATTTCGGAAAAGAAAAACCCAGTCTCGTCCACCCCGCCTGTAATAGACTCCAATCTGGCACTACCGGCGGACAGTCTCGCCTCCTACACCAGTACCGCCCCCGCCTTAAACCGACAGTTGTCCGCGCACAGCTCACCCTACGTCAGTCCGCTCCAAGCCTTGCCCACCTTGCCTAGCATCCCTACCAACACCAGGCGACGCGTCAGTTTTGAAACTCCCGACGAATCGGTGCCTCCCAGTCCGAACACGCGCAGCAAAAACTTCAATTTCACTCCTATTTCGCCTGGACCACACTCGCCGAATAGTAGCGCGCAGTCTAAATGTTCTAGTACTAACGCGAGTCCTTTTGTTAGTCCTAGGAATACTCCGGTACCGCGCACGAAGAACACGGCTCACCAGAACGCGGGTATTATGTTGGCACACGAGACCAGGAAGGGACCGGTGAAGGGAAAGAAGGATGTAGATTTGACGCCGTTGGAGATTTCTAACGATATTACCATGAAAAATTATATTCCGATGTCCGCTCCGGTCAGTCCGATGCTTCAGAAATTACTGAACACGAACAGTAAGATTCAGTACAGGCCAGAGTACGCCAACGTTCCCAAGCTTCCTCAACAACAACCACCTCCCGATCCCACGCAGCTTTTCACTGACATTTCCCGGTCTCAGTCGGTGCCATTACACCAAATGCAAACCGCCGGAGTGTATCCACCAATCAGCGACACGTCCGACAACATTATATCAGAGATATTAACGCGGGACCCGGAGTTTTGCGACATTCCCGGGCAGGACAACGAAAACGTGAAGTTGTTTTTGAACTCGCTAACCGAAGCACCTCCCTCTTGCGACAACAATAACATCGACGCTTTCAACCTGGACATTTCCTCCAACACTCACTGCCTCACCGAGTTCGGCCTGAACATAATCAACACAACCGCCGAGCCGAATTTTACCACAACAACCTTCGCGGCGCAAAAAATGAGAAACATAACCAGGTCGCAGAGCATCGACGTGGAGTCTACGTTCGAACTGGGCAAATGTAACCCGTCGCGGTCGGTGCCTAGTACGCCACTGCCTTTTACACAGAGCCTTAAGGTGGATGTGCCGGATAATAAGGCGTTCCAGAGCAGTTCCCGATCGTATCCTTCGACGCCTCTGACCAACGGCGAGCCGTTTGTCTATCAAGTGAACACGGACTGTCTACTGAACGGTCAGCCGATTCGCACTGACAACGCGGTGGAGAGCATCAAGTTTATCCAGAGTTACGAGATAGCGGCGGATCCGATCGTGCAAGAGAAGGGGTTCCAGTTGGACGGGGATTTTGGTATTATCGAAACAGGGGAAGCCTTGATGGACGAGAGCAGTATACTGATACAGCAGGGTTATAATGGTAATATTAATTAA
- Protein Sequence
- MENEQWSADYQQSVTAGIERPTSNLNNGNIKILAAENDLQNSLIKQDPDSKTIFPAEIKCENGQTSVLSEKSKQAIQLILAQIKTLSPNEKYLFYLKLPSEITDIIDPFRQPLNPLGSRSEISRTIVWIQTHLEEDQNISLPKKEVYNEYEQYCDKNTIKPLSQADFGKVMKQVFPKVRARRLGQRGNSKYCYSGLRRRVNLKPPLLPDISDKPLSTEAPITQSNLTYAAWLIVKDWAQQQLGVHFTSLQSLANYLVRHCSIGSGSEAASKLTSNSESQGKEKLNIVAESEKYNSSARKLAEKFGVGRTQVNDILKNKVELKKMFEEEGCNADKKRKFPKTEGFAIDQLVYEWFCKARNKNIPISGTLIREKALEVSTSLKLSEFKASTGWLNKFCKRHNINFKTICGESADVDEVTVEDWKTKLTAIIKEYDTKDIFNADETGLYYMAMPNKTFALKNDKCAGKKSAKQRVTLLFCCSMHGEKENPLVIETMEKAKESINLASTMVWISTAWKNVTSNTIKKCFQKAGFATVKGDDAFDEEDDIPLSQLSSILKNMPGSPDLKEYLTVDSDVPTENPSLEMQGIIQEFTNNKDRQDSTQAEEEEDEGQDILCSSINNMSEVCEKLRDIQNFLVIQNKDELAVDIAHTLMKFESEITKIKIKNLKQTTINQQYCDKNTIKPLSQADFGKVMKQVFPKVRARRLGQRGNSKYCYSGLRRRVNLKPPLLPDISDKPLSTEAPITQSNLTYAAWLIVKDWAQQQLGVHFTSLQSLANYLVRHCSIGSGSEAASKLTSNSESQGKEGDEAVCKNNNKHREMQIQLQKKIQQRNEGKERKRKIPPAVKSEPKPGVKKCRSQSVPASSVASALSQDSISSVGANGGLTGSGAGAGGLTSGGECSTASSSCGSNSVSPTQGRATICDKPEFTQLTALPDFNSFQKPVLGEAAACNGTGVGQEKTNPLVSGILGKKLPIPRLHGGGNNGTTTSASHTAQAKTPPQQQRKPKYKVIQPRLQPCDIATYNSSAAAQTTVTTQTETVASLADTRSQQVHCGAKEDDSSKAKPIDNKYEDNLNECDDDEDFPLTRERLESVSNVDKDAMDEYLGTNNSQHEEELSKYFNGNEESDPTPRNREQLSTLRQLLEQNGISEKKNPVSSTPPVIDSNLALPADSLASYTSTAPALNRQLSAHSSPYVSPLQALPTLPSIPTNTRRRVSFETPDESVPPSPNTRSKNFNFTPISPGPHSPNSSAQSKCSSTNASPFVSPRNTPVPRTKNTAHQNAGIMLAHETRKGPVKGKKDVDLTPLEISNDITMKNYIPMSAPVSPMLQKLLNTNSKIQYRPEYANVPKLPQQQPPPDPTQLFTDISRSQSVPLHQMQTAGVYPPISDTSDNIISEILTRDPEFCDIPGQDNENVKLFLNSLTEAPPSCDNNNIDAFNLDISSNTHCLTEFGLNIINTTAEPNFTTTTFAAQKMRNITRSQSIDVESTFELGKCNPSRSVPSTPLPFTQSLKVDVPDNKAFQSSSRSYPSTPLTNGEPFVYQVNTDCLLNGQPIRTDNAVESIKFIQSYEIAADPIVQEKGFQLDGDFGIIETGEALMDESSILIQQGYNGNIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -