Smos014579.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- nfxl1
- Assembly
- GCA_009176505.1
- Location
- VUAH01006225.1:19365353-19368681[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2 1.9e+04 -7.9 5.6 15 19 191 195 190 195 0.81 2 16 0.056 5.5e+02 0.8 0.2 4 10 226 232 225 233 0.96 3 16 5.1e-08 0.00049 20.2 13.5 1 19 240 257 240 257 0.94 4 16 8.9e-06 0.086 13.0 12.5 1 19 293 310 293 310 0.95 5 16 0.95 9.3e+03 -3.1 1.5 6 10 335 339 334 339 0.89 6 16 9.7e-09 9.5e-05 22.5 14.6 1 19 345 363 345 363 0.99 7 16 1.7 1.6e+04 -3.9 1.3 1 8 388 394 388 395 0.67 8 16 1.2e-07 0.0012 19.0 12.0 1 18 398 415 398 416 0.97 9 16 4.1e-06 0.04 14.1 14.3 1 18 450 467 450 468 0.94 10 16 5.6e-09 5.5e-05 23.2 14.1 1 18 477 494 477 495 0.99 11 16 0.067 6.5e+02 0.6 6.0 10 19 542 551 540 551 0.92 12 16 0.27 2.6e+03 -1.3 6.4 3 12 564 573 563 573 0.88 13 16 2e-05 0.19 11.9 5.4 1 11 644 654 644 655 0.96 14 16 0.0094 91 3.3 13.4 4 18 685 699 683 700 0.92 15 16 2.4e-07 0.0023 18.0 10.7 1 18 751 770 751 771 0.90 16 16 1.5 1.4e+04 -3.7 0.8 6 10 800 804 799 804 0.86
Sequence Information
- Coding Sequence
- ATGTCGTCATttagcaataaaaataaaaagaaaacgccACAATCgtcgaataataataaatcgaaTGCATCGTCGAATGCATGGCATaccaaagaaaacaaaccGCAAATTTCACTGACAAGAGAATCCAAGAATACGGCAAACAAGCAAAATGTTGCCAAAGCAAAATTCAAAGCGGCTCAACAGGAACATTTGCAAGCAGCTAAAAAGCATATCCAAAATTACGAGTCGAGTTCCGATGAAGAGGATCTGGAAAGTGATGCACTACTCGAATCGGTGTTCAAAGGATACGATGGTGATCGAAGTCAATTGCGAAAGACACAAGAATTTCTTGAGCATGTTTTTCAATCGGGAGCGGCGACCTGCTTGATTTGCATCGCAACAGTTAAACGAACGGATTATATATGGTCATGTGACAATTGCTACAGTTTCTTCCATTTGAATTGTCTACAACGATGGGCTAAAGACAGCATATCACAACAGAAAATGCATCAGGAAAATGATGTCGCTGGCTATTACAATAACCAAGGCGAGTAtattcaaaagcaaatcaaagcCATCAAATGGTGTTGTCCAAAATGTCGTGCCGATTATCCACCGACTGAAATTCCACAAAACTACGTTTGCTTCTgtaaaaaagaattgaatccGGTGAATCATCTGTGGCTGGTGCCACATTCATGTGGCGAAGTGTGTGGAAGCCCACTGAAATCGGCATGTTCACATCGATGTATGCTACTTTGTCATCCGGGACCGTGTCCACCGTGCTCGCAGATCATAAGCACATCGTGTGAATGTAAGAAATCCAATTTACGGACGATTCGATGCTCGCAAAATTCATGGAAATGCGGAAATAagTGCTCAAAAATTCTCGTTTGTGGCATACATAAGTGCGATCAAATATGTCACGAAGTGTGTCCACCGTGCACAAAGAAAAGTTCACAAAAGTGTATATGCGGCAATAAAACGCAGGAACGCGATTGCACCAGTCTGATTTGGTCGTGTGAGAAAACATGCAACAAATCGTTTGATTGCGGCCGACATCGGTGCAAAGTGAAATGTCACAGCGGCGATTGTGGTGAATGCCCGAATGGCTTGCTCAGATCTTGTCCCTGTGGAAAAGAGACAACCCAAGCACCGTGTAGCATAGAAATTGAACCTTGTGGCAATACCTGCCAGAAGACGCTAAAGTGTGGTAATCATATATGTGCTGAACGATGCCATCGCGGCGAATGTGGCCAATGTTTGGAAATCATTGAAAAGAAGTGTCGTTGTGGCCTCTATTCAAAGGAGGTACCCTGCAGCAAAGTCAATTTGTGCGAAGCAAAATGCAAACGCATGCGTGACTGCAATAAACATGCATGCAATCGGaaaTGTTGTGATGGGGATTGTCCGCCATGTGATAAAATATGCGGCAAAGTATTATCTTGTGGAAAGCACAAGTGTACATCGGTTTGTCATAACGGCCAATGCTATCCGTGTGGCTTGACAGCAACTGTTAAATGCCGATGCGGAAATACGACGATCGAAGTTCCATGCGGTCGCGAGAAGAAAACCAAACCaccaaaatgcaatttacCATGtaaaattccatcgaaatgTCATCATTTCAACGCACACAATTGCCACATGAACGAATGCCCTCCGTGTACTGAACAGTGTCTGTTGACAAATGATGTAACCAATTGTGAGCATCCATGTCGGGCCAAATGCCATGATGCAGTTAAAGTTCAGATTATCGATAAGAATTTTAAACCAGCTGGCCCTTGGGATATTCAACCGGAAAAGTATGAGATTCGAAAATTGCCGCATCCAAAGTGTGAAGTCAAAGTACCGGTTGAATGTATCGGTGGTCATGAATTGGCATTATGGCCTTGCTGGAATTCGAAGCCAGCATCATGCGGCCGCATTTGTGGTCGAGCATTGAAATGTGGCAATCATGTGTGCGAACAAATGTGCCACGCGGTGGACGATAAATCGTCAACCAAGCAAGAAAAGTCTTGCGCTGAATGTTTGGAAGGCTGTAAAATACCGAAACCACCAGGATGTGTTCATGCATGCGAGAAAAGGTGTCATCCAAAGCCGTGCAACCAATGTAATATAGTCACAAAAACCGCCTGTCATTGTGGACTGAATCAAGTATACTACAAATGCCACGAATTCTATGGCGAAAATCAAGATGATGACGAGATCAAGGAAAATCGCGAGAAGCGACTGAGCTGTGGAAATCGATGCATCAAAAATtTCTCATGCGGACATCGTTGTACGAATGTGTGCCATTCGGGCCGTTGTCAAAACGAAGAATCATGCCGAAAGAAGCTCAAAGTGTATTGTGAttgcaaaaatcgaaaaatcgaaaccaCTTGCGACAAAATCCGTTCTGGTTTCGCATTGAGCTGCGATGAAACCTGCACAAGTCGACAGGAAGAATTGAAACGAGCTGCAGAGCAGCAAGAGCGCTCTCGTCGTGAGCAGGAAGAAGAGAAGAATCGTTTGGAGCTCGAAGAGTTTGAGAAGAAATTCGGCAAAAAGAAGTAcaaggagagaaaaacacaagtCATCGAAGATAAAAACAATTCATATCTTTTCAAATGGGCTGGACTTGCCATTGCCGTAGCAGTTCTTGCAGGATTTATTTACTTCCTCATTTCGCAATAG
- Protein Sequence
- MSSFSNKNKKKTPQSSNNNKSNASSNAWHTKENKPQISLTRESKNTANKQNVAKAKFKAAQQEHLQAAKKHIQNYESSSDEEDLESDALLESVFKGYDGDRSQLRKTQEFLEHVFQSGAATCLICIATVKRTDYIWSCDNCYSFFHLNCLQRWAKDSISQQKMHQENDVAGYYNNQGEYIQKQIKAIKWCCPKCRADYPPTEIPQNYVCFCKKELNPVNHLWLVPHSCGEVCGSPLKSACSHRCMLLCHPGPCPPCSQIISTSCECKKSNLRTIRCSQNSWKCGNKCSKILVCGIHKCDQICHEVCPPCTKKSSQKCICGNKTQERDCTSLIWSCEKTCNKSFDCGRHRCKVKCHSGDCGECPNGLLRSCPCGKETTQAPCSIEIEPCGNTCQKTLKCGNHICAERCHRGECGQCLEIIEKKCRCGLYSKEVPCSKVNLCEAKCKRMRDCNKHACNRKCCDGDCPPCDKICGKVLSCGKHKCTSVCHNGQCYPCGLTATVKCRCGNTTIEVPCGREKKTKPPKCNLPCKIPSKCHHFNAHNCHMNECPPCTEQCLLTNDVTNCEHPCRAKCHDAVKVQIIDKNFKPAGPWDIQPEKYEIRKLPHPKCEVKVPVECIGGHELALWPCWNSKPASCGRICGRALKCGNHVCEQMCHAVDDKSSTKQEKSCAECLEGCKIPKPPGCVHACEKRCHPKPCNQCNIVTKTACHCGLNQVYYKCHEFYGENQDDDEIKENREKRLSCGNRCIKNFSCGHRCTNVCHSGRCQNEESCRKKLKVYCDCKNRKIETTCDKIRSGFALSCDETCTSRQEELKRAAEQQERSRREQEEEKNRLELEEFEKKFGKKKYKERKTQVIEDKNNSYLFKWAGLAIAVAVLAGFIYFLISQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00367847;
- 90% Identity
- -
- 80% Identity
- -