Basic Information

Insect: Sitodiplosis mosellana
Gene Symbol: RREB1
Assembly: GCA_009176505.1
Location: VUAH01000029.1:2746215-2769080[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00012 0.0074 16.8 1.1 1 23 173 195 173 195 0.98

2 14 0.00024 0.014 15.9 0.1 1 23 204 226 204 226 0.98

3 14 1.2e-05 0.00074 20.0 7.2 1 23 232 254 232 254 0.99

4 14 7.5 4.5e+02 1.8 3.3 3 22 387 406 386 406 0.87

5 14 2.7 1.6e+02 3.2 0.2 1 19 452 470 452 473 0.82

6 14 0.0093 0.55 10.9 0.1 1 23 614 636 614 636 0.97

7 14 4.7e-05 0.0028 18.1 1.0 1 23 648 670 648 670 0.99

8 14 0.00048 0.029 14.9 2.0 1 23 676 699 676 699 0.97

9 14 0.001 0.062 13.9 2.1 1 23 1012 1035 1012 1035 0.95

10 14 9e-05 0.0054 17.2 0.3 2 23 1281 1302 1280 1302 0.97

11 14 0.11 6.4 7.6 4.2 1 23 1308 1331 1308 1331 0.96

12 14 1.3 80 4.1 3.7 1 23 1399 1422 1399 1422 0.95

13 14 0.0088 0.52 11.0 0.5 3 23 1474 1494 1472 1494 0.96

14 14 0.04 2.4 8.9 4.9 1 23 1500 1522 1500 1522 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00012	0.0074	16.8	1.1	1	23	173	195	173	195	0.98
2	14	0.00024	0.014	15.9	0.1	1	23	204	226	204	226	0.98
3	14	1.2e-05	0.00074	20.0	7.2	1	23	232	254	232	254	0.99
4	14	7.5	4.5e+02	1.8	3.3	3	22	387	406	386	406	0.87
5	14	2.7	1.6e+02	3.2	0.2	1	19	452	470	452	473	0.82
6	14	0.0093	0.55	10.9	0.1	1	23	614	636	614	636	0.97
7	14	4.7e-05	0.0028	18.1	1.0	1	23	648	670	648	670	0.99
8	14	0.00048	0.029	14.9	2.0	1	23	676	699	676	699	0.97
9	14	0.001	0.062	13.9	2.1	1	23	1012	1035	1012	1035	0.95
10	14	9e-05	0.0054	17.2	0.3	2	23	1281	1302	1280	1302	0.97
11	14	0.11	6.4	7.6	4.2	1	23	1308	1331	1308	1331	0.96
12	14	1.3	80	4.1	3.7	1	23	1399	1422	1399	1422	0.95
13	14	0.0088	0.52	11.0	0.5	3	23	1474	1494	1472	1494	0.96
14	14	0.04	2.4	8.9	4.9	1	23	1500	1522	1500	1522	0.99

Sequence Information

Coding Sequence: ATGAACAAGCAACGACTTTCGACGGCATCTGAATCATCGTCAGCGGACACAATGGAAACTGATGATAAGATTGAGGTTCCAACTGATAGCAATAAAACAATGACCAGATCGTCGAGCATCGAAACAGCATCGGCGAAAAAGAGTGAACCGTCATCGGAACGTGAAACACGGCGCACATCGCATGATCGGCGAAAGAGCCGAGGCCACAGTGAAACGGAGTGTAATGATGCCGATATTgaggaaaatgaaacaaataacgATACATCGAATGCAATTGTGCGACGAGAGAATCTACGCCAATTGGAAAACAGCATGATTTCATTGCGAAAAAGTTTTCGATTCGCTGCAAACAATAATGAACGTGTATcgaataacaataacaacaacaacaacaataataataataagagcaccaataacaataattgtaaaacaaacaaccattcaaaacGGTCACAACGCATTGGAAGCAATGAGAACAGCGATGGCAGCAACGAAAATACCAAATCGACACAGTACAGTTGCCCGATCTGCGGCGTTTGCTCAGCCACACAGCATGACTTCACCGAACACATACGCGGCCACAATAATTCGGATGGAAGTCATAATTATACATGTCAGATCTGCTTTAAGGTTGTATCATCGGCATCCTCTCTTGATCGGCATGTTTTGGTGCACACAGGCGAACGGCCATTCACGTGCAAATATTGCCACGTGACATTTACAACGAATGGCAATATGCATCGTCATATGCGCACGCACAAACACCGAGATGGTTTGACAAACAAAGGTGCAGCTTCCGCAGTAACGAGCaacagtagcaacagcagcaacgacCCCAATTCAACCGAACCAAAATCGAGCCATCGACGCACCGGTGAAACATACGAGAGCGATGGATCGACGGATTCAAATGCCAGTGGCTCTGGTACAGATGGCAAACGAAAGAATCATGATGACAGTTATTCATCGATTGGCATGAAACGACGTCTAAAAACCatcaataataacaatttaatCAATAACAATTCGATTAATGTTAATAGCAATGTTCAGCCTCAACGATTCTGTTGCCCGGTTTGTGTgcgtaatgattttttaacgATGATTAGCTTAGAAAATCATGTCGATACGGAGCATCCAAGCATTCAGGCCAAGTGCCGTTGCTGTGAGATCGTGTTCAAGAGTTACAAAGCGCTCAATGCACACAAATGCACGGTCAACAATAAACCACCGCACATTACGCAAGGCTTCAAGGATCTCACattcgttgatttttcgaGTGAAAAATTCCCGCTGATTGCAAAGGTTGCATGTGAGAAGAGCATTCGCACTCCGGTCACtaatcaaaaatatgaatgtcCACGATGCTATCGCGCTTTTCCATGCTCAAGTGCCGTTGAAATTCATGCATTGAAATGTGGCGATTTGAAGCAATCCGTTTCGCTACGCAAACGAGCTTTGTCCGAGACATCTGATGAGGCTGACAACCGTCGACGTGACGATTTCTTCGCTCACTTGGATTTGAAGAACAAACATGACGATTTGAACGATTCATTCCAGTCCGGCTACAATTCCGATACGGATGTGATTGAGCACAAAAAATCACGCATTTCCAAAGATGATTGGTACACAAAAGCGGCGAATGGTGAATACAAAGATTTGGCTGACATTCAATCGATGATTAACGTTAGCTCAGCGGGCAGTGAACTGTTGCGTCAACTCGATCAACCGATGTCCTCGATGGCATCATCAAATGAACAACTCTATTCGcgcgaagaagaagaacaacaagaTGCTTTCACCGCTGAATtccgcaaaatgaaattgcgtGGCGAATTCCCGTGCAAGCTATGCACTGCGGTATTTCCGAATTTACGCGCACTCAAAGGTCACAATCGCATTCACTTGACGGCAGCTGGTGCGGGACCGAATGCAGTATTCCGTTGCAACATGTGTCCGTATTCGATTCATGACAAAGCCGCTTTAATACGTCACATGCGCACACACAACGGTGATCGCCCATATGAATGTGCCATTTGCAATTATGCATTCACCACCAAAGCCAACTGCGAACGACATTTACGCAATCGACATGGAAAGAGCACACGCGATGAGGTCAAACGTGCAATTATCTACCATCCGTCAGAAGATTCGAGTTGCGATGATCCGGTGAAGAAGATGCAAATCTTTAATATGTCATTCGAAGAAGATGAATTACCGCCTAAAGATCGCTCAACACCAGTTTCGCTCATCAAGGATTCGCCCAATTCAAGTGCTGAAAAGGTGGCAAAGATCCAAGTCAAGAGCATCGATCAATTGACCCAGTACAAGAATCAAGTCACCGATttgagtgaaaatgaaacgaaaccgATCAAATTGACCGACACAAAGCCAATGGATCTGTCGATGGACGTATTGGATTTGAGCAAAAAGAATGCCAGCGATCTGTTGTCAGCACCCGATATGTCATTGTTTGAGAAAAATCAGCAATTGTTTCTGGCCCAACAGAAACTTCTCAGCGAAGCATTGCCACAAATTGATCCAGCTCATTATTTCCAGTTGTCACAGTTGTATCGTAATCTAGTGTTCCCAACGACTGGACTTCCTTtgcatccattttttttgcaaaatcaaCTGTTGGCCCAATTGCCGACGCCAAATttcaacgaattgaaaaatctcATGAAAAACGATGTGCTCTCAACGCCAACCAACAACATGTACCCGAACGGCATGTTCATCAATCCAATCTTTCCAACGCCGCCAAATATGCCGCAAGCCAATTTCCCCACATCGACTCTGCTACAGGAAGCTTTGAAACAGGAATCACCGCCACAACGAAATGCAACGCCACCAGCCGTTCAATTGCCACTCACTCCGCAAACACCACGCTCTTCCAGAGGAGTTCAAATGCCACAAAGGCCACAACCGATGCCGCGCATCTCAAGCCCGGGCCCCGTTAAAATGGTCATCAAAAATGGTGTTCTCAtgccaaagcaaaaacaacgTCGCTATCGCACTGAACGACCATTCGCCTGCGATCATTGCTCAGCCCGGTTCACATTGCGATCGAACATGGAACGTCATATCAAGCAACAGCATCCACAATTTTGGGCTCAGCGTCAACGTAGCGGCCATAATTTTATACGCCGTAGCAGCAACACCAGTCTCACACCGACCTCGTCGATGCAAAATCAAGATTTGTCTAGCTCAAGTTtgatggaaaacaaaaatgcattcaacgCCATTTCGGATCAGGTGAAATTCGCAATCCTTGCTCAACAGCTCAAGAGCCGATCCAACAAAAGCTTCGATTCGATGGAAGAACAAGACGAAAATGATGAAGACGCTGAAAATTACAAGGATGACATGGATGAACCGAAACTATTCATCGATGAAGACGATGATTCTGAGCCAAGAGATTTATCGCACAAGAATATCAAACGTTCACTTTCACCGATCGACAACAATGCAGTGGCAAAGAAAATCGCAAAGAATATTTTGCTCGAGGCAATTAACGCAGAATCACATACCACCGAAAAAATGGATATCCGTTCGAAAGCTTCGAAGGAAAGCTATGAAAATCGCTCACGCAAATCATCGAAAGACGAAAACGATCTGGTTTCGGTTTCAACACTCGTCGACAATGCAACCAATTCGGTTGGTTTGGGTAAATACTTCAATGCCGACTGTCAATCGAATGAACACAGCGATGAAGAGGGTTTAGTTGCTTCGGGAAGCACATCTGAAGGCAATAATTCGGGCACTGAAGATCCAAACCCGAATCCAGCGGAAGGAAAGAAGAAATCGGCCTACAGTTTGGCTCCGAATCGTGTTTCGTGCCCATACTGTCAACGCATGTTCCCTTGGTCGAGCTCATTGCGTCGTCACATTCTCACTCACACCGGGCAAAAGCCATTCAAGTGTTCACAATGTCCGTTGCTCTTCACCACCAAGAGTAACTGCGATCGTCATTTGCTTCGTAAACACGGTGACGTTGATTCGGCCGTTTCATTGTACGTTCCCATTGAAGACATTCCCGATCCAATAACGAAGCCAGTACGTTCGCCAtcgccaccgccaccaccagCAAAGTCAATCATTCCGACTCAGCCGATTTTGccacaaattcaattgaacattcCACCATTGAAGAACGACATTTCGGCCGGATCCAACAGCGATTTACCATTCAAGTGTCACTTGTGCGATGGATCGTTTGGAGATCGCTTCTCGTGTTTGGACCACATCAAAGTGTATCATTCGCAAGAGTTTGCATTGTTATTGGCAAAAGGTGCCATTGAGCCCGAAGACGATGTGCAGGAAATTCAAGCCGTTTCAGCCGAAGATGAGAaagagcaaaatgaaaatggtggCCGTGGCAAATATCCAGATTATGCAAATCGCAAAGTGATTTGTGCATTCTGTGTGCGCCGTTTTTGGTCAACGGAAGATTTGCGTCGTCATATGCGCACTCATTCGGGTGAACGTCCATTCcAATGCGGCATTTGCATGCGCAAATTCACACTAAAGCACAGCATGCTGCGTCATCAGAAGAAACATGCCAACAGTTTGAATTCGAATCATCATCACAGTGCATCCGATTTATCGGATGACGAACAGCAACTGTCAAGCACACCACCACCCATGCCAAAAATTGCACccgaaaaaatggcatcaCTTGCCGACGCTCTATTGAAAACGCAAAATCTTTCCGAATTAATTGCAAAGAAATTCCTAATGAACAGAGCATTGGGAGAGCGCGACGATGGAGACAACCGACGAGCCACCGGATCAACAGAAGGTGGCCTTGACAGCGAAGAAACATCTGAATTGATTGGAAATCTATTGGGCATCAGCGATTCAAGCATCCTAAACAAAGTCCTCTTGTCATCAGCCGACGAAGCAGCCAAATTGCTCGGAGTCGAAAAgtaa
Protein Sequence: MNKQRLSTASESSSADTMETDDKIEVPTDSNKTMTRSSSIETASAKKSEPSSERETRRTSHDRRKSRGHSETECNDADIEENETNNDTSNAIVRRENLRQLENSMISLRKSFRFAANNNERVSNNNNNNNNNNNNKSTNNNNCKTNNHSKRSQRIGSNENSDGSNENTKSTQYSCPICGVCSATQHDFTEHIRGHNNSDGSHNYTCQICFKVVSSASSLDRHVLVHTGERPFTCKYCHVTFTTNGNMHRHMRTHKHRDGLTNKGAASAVTSNSSNSSNDPNSTEPKSSHRRTGETYESDGSTDSNASGSGTDGKRKNHDDSYSSIGMKRRLKTINNNNLINNNSINVNSNVQPQRFCCPVCVRNDFLTMISLENHVDTEHPSIQAKCRCCEIVFKSYKALNAHKCTVNNKPPHITQGFKDLTFVDFSSEKFPLIAKVACEKSIRTPVTNQKYECPRCYRAFPCSSAVEIHALKCGDLKQSVSLRKRALSETSDEADNRRRDDFFAHLDLKNKHDDLNDSFQSGYNSDTDVIEHKKSRISKDDWYTKAANGEYKDLADIQSMINVSSAGSELLRQLDQPMSSMASSNEQLYSREEEEQQDAFTAEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRIHLTAAGAGPNAVFRCNMCPYSIHDKAALIRHMRTHNGDRPYECAICNYAFTTKANCERHLRNRHGKSTRDEVKRAIIYHPSEDSSCDDPVKKMQIFNMSFEEDELPPKDRSTPVSLIKDSPNSSAEKVAKIQVKSIDQLTQYKNQVTDLSENETKPIKLTDTKPMDLSMDVLDLSKKNASDLLSAPDMSLFEKNQQLFLAQQKLLSEALPQIDPAHYFQLSQLYRNLVFPTTGLPLHPFFLQNQLLAQLPTPNFNELKNLMKNDVLSTPTNNMYPNGMFINPIFPTPPNMPQANFPTSTLLQEALKQESPPQRNATPPAVQLPLTPQTPRSSRGVQMPQRPQPMPRISSPGPVKMVIKNGVLMPKQKQRRYRTERPFACDHCSARFTLRSNMERHIKQQHPQFWAQRQRSGHNFIRRSSNTSLTPTSSMQNQDLSSSSLMENKNAFNAISDQVKFAILAQQLKSRSNKSFDSMEEQDENDEDAENYKDDMDEPKLFIDEDDDSEPRDLSHKNIKRSLSPIDNNAVAKKIAKNILLEAINAESHTTEKMDIRSKASKESYENRSRKSSKDENDLVSVSTLVDNATNSVGLGKYFNADCQSNEHSDEEGLVASGSTSEGNNSGTEDPNPNPAEGKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSQCPLLFTTKSNCDRHLLRKHGDVDSAVSLYVPIEDIPDPITKPVRSPSPPPPPAKSIIPTQPILPQIQLNIPPLKNDISAGSNSDLPFKCHLCDGSFGDRFSCLDHIKVYHSQEFALLLAKGAIEPEDDVQEIQAVSAEDEKEQNENGGRGKYPDYANRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCGICMRKFTLKHSMLRHQKKHANSLNSNHHHSASDLSDDEQQLSSTPPPMPKIAPEKMASLADALLKTQNLSELIAKKFLMNRALGERDDGDNRRATGSTEGGLDSEETSELIGNLLGISDSSILNKVLLSSADEAAKLLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00133677;
90% Identity: -
80% Identity: -