Basic Information

Insect: Aphidoletes aphidimyza
Gene Symbol: RREB1
Assembly: GCA_030463065.1
Location: CM059996.1:34453204-34458494[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00013 0.0074 16.8 1.1 1 23 169 191 169 191 0.98

2 14 0.00026 0.014 15.9 0.1 1 23 200 222 200 222 0.98

3 14 1.3e-05 0.00075 20.0 7.2 1 23 228 250 228 250 0.99

4 14 8.6 4.8e+02 1.7 2.5 3 20 387 404 386 406 0.88

5 14 4.1 2.3e+02 2.7 0.2 1 19 452 470 452 473 0.81

6 14 0.029 1.6 9.5 0.1 1 23 618 640 618 640 0.97

7 14 8.4e-06 0.00047 20.6 0.3 1 23 649 671 649 671 0.99

8 14 0.00053 0.029 14.9 2.0 1 23 677 700 677 700 0.97

9 14 0.0011 0.062 13.9 2.1 1 23 1010 1033 1010 1033 0.95

10 14 9.8e-05 0.0054 17.2 0.3 2 23 1287 1308 1286 1308 0.97

11 14 0.12 6.4 7.6 4.2 1 23 1314 1337 1314 1337 0.96

12 14 6.1 3.4e+02 2.2 4.8 1 23 1402 1425 1402 1425 0.93

13 14 0.0095 0.53 11.0 0.5 3 23 1474 1494 1472 1494 0.96

14 14 0.044 2.4 8.9 4.9 1 23 1500 1522 1500 1522 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00013	0.0074	16.8	1.1	1	23	169	191	169	191	0.98
2	14	0.00026	0.014	15.9	0.1	1	23	200	222	200	222	0.98
3	14	1.3e-05	0.00075	20.0	7.2	1	23	228	250	228	250	0.99
4	14	8.6	4.8e+02	1.7	2.5	3	20	387	404	386	406	0.88
5	14	4.1	2.3e+02	2.7	0.2	1	19	452	470	452	473	0.81
6	14	0.029	1.6	9.5	0.1	1	23	618	640	618	640	0.97
7	14	8.4e-06	0.00047	20.6	0.3	1	23	649	671	649	671	0.99
8	14	0.00053	0.029	14.9	2.0	1	23	677	700	677	700	0.97
9	14	0.0011	0.062	13.9	2.1	1	23	1010	1033	1010	1033	0.95
10	14	9.8e-05	0.0054	17.2	0.3	2	23	1287	1308	1286	1308	0.97
11	14	0.12	6.4	7.6	4.2	1	23	1314	1337	1314	1337	0.96
12	14	6.1	3.4e+02	2.2	4.8	1	23	1402	1425	1402	1425	0.93
13	14	0.0095	0.53	11.0	0.5	3	23	1474	1494	1472	1494	0.96
14	14	0.044	2.4	8.9	4.9	1	23	1500	1522	1500	1522	0.99

Sequence Information

Coding Sequence: ATGAATAAGCAGCGACTCTCAACCGCATCTGAGTCATCATCCGTGGACACAATGGACATTGATGACAAAATTGAGCATTCAATTGATAGCAATAAAACGTTGGCAACCAAATCCAGCACAGAAACGACAATGGTGAAAAAGTATGAGACAAGCGATCGTGAAACACGGCGTACATCGCATGATCGCCGAAAGAGCCGCGGCCACAGTGAAACGGACTGTAATGATGCCGATATTGAggaaaatgaagcaaatacCGAACCATCGAATGCGATTGTGCGACGAGAGAATCTACGCCAATTGGAAAATAGCATGATTTCATTGCGTAAAAGTTTTCGATTCGCTGCTAACAATAATGAGCGTGtatccaataacaacaacaataacaataataagagcaccaataataataattgtaaAACAAATAACCATTCGAAACGGTCACAACGCATTGGAAGCAACGAGAACAACAGCGATGGCAgcaatgaaaatgccaaatcGACACAATACAGTTGTCCGATCTGTGGCGTTTGTTCAGCCACACAGCATGACTTCACCGAACACATACGCGGCCACAACAACTCGGATGGAAGCCATAATTATACATGCCAGATCTGCTTTAAgGTTGTATCGTCGGCATCCTCGCTCGATCGTCATGTTTTGGTTCACACTGGCGAACGGCCTTTCACGTGCAAATACTGTCACGTGACATTCACAACAAACGGCAATATGCACCGTCATatgcgcacacacaaacatcgaGATGGTTTAACCAACAAAGGTGCAGCTTCCGCAGTAACCAGCAACAGTAGCAACAGCAGTGGcggcagcaacaacaacgacccCAATGCAAACGACACCAAATCGAATCGTCGAACCGGTGAAACGTACGAGAGTGATGGTTCGACTGATTCGAATGCCAGTGGCTCTGGTACAGATGGCAAGCGAAAGAATCATGATGACAGTTATTCATCGATTGGCTTGAAACGACGTCTCAAAACCATCAATAATAACAACTTAATCAATAACAATTCGATTAATGTTAATAGCAATGTTCAGCCTCAGCGATTCTGTTGCCCGGTTTGTGTTCGCAACGATTTCTTAACGATGATTAGCTTAGAAAATCATGTCGATACGGAGCATCCAAGCATTCAAGCCAAATGCCGTTGCTGTGAAATCGTGTTCAAGAGCTACAAAGCGCTCAATGCCCATAAATGCGCTGCCAATAATAAGCCGCCGCACATTACGCAAGGCTTTAAGGATCTcacatttgttgatttttcaagcGAAAAATTCCCATTGATTGCAAAAGAAGCTTGCGAGAAGAGCATTCGTACACCGGTGACCAATCAAAAATTCGAATGCCCAAGATGCTATCGTGCATTCCCATGCTCAAGTGCCGTTGAAATTCATGCAATCAAATGCGGTGCAAATGATTCAAAGCATGCAATTTCGTTGCGCAAACGCGCCCTTTCCGAATCATCTGAAGAGGCTGACACACGCCGTCGTGACGATTTCTTTGCCCgtttggatttgaaaaataaacatgatgatttgattgattcattccattcaaattcTGGATACAATTCCGATACCGATGTGGTTGAGCACAAAAAATCGCGCATTTCCAAAGATGATTGGTATTCAAAGGGTTTGAATGGTGAATTCAAAGATTTAGCTGACATTCAGTCCATGATCAATGTTAGTTCATCGGGCAGTGAACTTTTGCGTCAACTCGATCAACCGATGACCTCAATGGCATCATCAACTGAACAACTGTATTCACGCGATGAAGAAGAACAACAAGATGCTTTTACCGCTGAATTCCGTAAAATGAAGTTACGCGGTGAGTTCCCGTGCAAATTGTGTACAGCGATCTTTCCAAATTTGCGTGCGTTGAAAGGTCACAACCGTATTCATTTGACAGCAGCTGGTTCAGGGCCATTCCGCTGCAACATGTGCCCGTATTCGATTAATGACAAAGCCGCTCTGATTCGACACATGCGAACCCACAACGGTGATCGTCCATATGAGTGTGCCATATGCAATTATGCATTCACTACCAAAGCAAACTGCGAACGCCATTTACGTAATCGCCATGGAAAAAGCACTCGCGAAGAGGTCAAACGCGCAATTATCTATCATCCTTCGGAAGATTCCAGCTGTGACGATCCGgttaaaaaaatgcaaatcttTAATATGTCCTTCGATGAAGATGAAATGCCAAAAGATCGTTCAACACCAGTTTCGCTCGTAAAAGAGTCGCCAAATTCCAGTGCCGAAAAAGTGGCAAAAATTCAAGTCAAAAGCATCGATCAATTGACCCAGTTCAATAATCAAGCAACCGATTTAAGTGAAAAAGATATCAAACCAATTAAATTGCCCGAAACAAAGCCCATGGATTTATCAATGGATGCTTTAGATTTGAGCAAAAAGAGTGCCAGCGACATTTTGAACACATCTGATTTATCATTGTttgagaaaaatcaacaactcTTTTTGGCACAGCAGAAACTTCTCAGCGAAGCTTTGCCACAAATCGATCCGGcccattattttcaattgtcacAATTGTATCGTAACCTCGTTTTTCCAACGACTGGACTTCCTCTGCATCCATTCTTTttgcaaaatcaattgttggCACAATTACCGACGCCAAATTTCAACGAATTAAAAAATCTCATGAAAAATGATGTACTTTCAACGCCAACGAACAACATGTATCCGAACAGCATGTTCATCAATCCGATATTTCCGACGCCGCCAAATCTACCACAAGCGAATTTCCCAGCATCGACTCTACTTCAAGAAGCCTTAAAACAAGAATCACCACCACAACGAAGCACACCACCGCCCGTTCAGTTGCCATTGACTCCTCAAACGCCACGCTCTTCCAGAGGAGCGCAACTACCACAAAAGCAACCGCCGATGCGCCTCTCAAGCCCAGGCCCCGTTAAAATGGTCATCAAAAATGGAGTTCtaatgccaaaacaaaaacaacgtcGCTATCGTACGGAACGACCGTTTGCTTGTGATCATTGCTCAGCTCGTTTCACATTGCGATCGAATATGGAGCGTCATATCAAGCAACAACATCCACAATTTTGGGCACAACGTCAACGCAGCGGCCATAATTTTATTCGTCGCAGCAGCAGTGCCAGTCTTACGCCAACTTCATCGATGCAAAGTCAAGATTTATCTACATCCAGTTTAATGGACAACAAAAACGCATTCAATGCCATTTCCGATCAAGTGAAATTCGCCATACTTGCTCAACAGCTCAAGTGCcgatcaaacaaaaatttcgattcaatggAAGACcaagatgaaaatgatgaagatgCTGAAAATTACAAAGATGACATCGACGAACCCAAACTGTTCATTGACGAAGAAGATGATTCAGAACCAAAAGATTTATCGCACAAAAATATCAAGCGTTCACTTTCACCAAGCGATAGCAATGCAGCCGcaaagaaaattgcaaaaaatattcttttgGAAGCAATGAGCGCTGAGTCACACATTGATGCAAAAGGTGACATTTCGAACCGTTCAAACCGTGAATCGAAAGACACAAAAGAGCATTTTGATAATCAAAATCGTTCACGCAAATCGTCCAAAGATGAAAGCGATTTGGTTTCAGTTTCGACACTCGTTGATAATGCCACTAATTCGGTTGGTTTgggtaaatattttaatgctGATTGTCAGTCAAATGACCATAGCGATGAAGAGGGTTTGGTTGCCTCGGGTAGCACATCAGAAGGCAATAATTCGGGCACTGAAGATCCAAGCCCAAATCCAGCCGAAGGCAAAAAGAAATCGGCTTATAGTTTGGCGCCAAATCGTGTTTCGTGCCCATACTGCCAACGCATGTTCCCATGGTCGAGCTCATTGCGTCGTCACATTCTAACACATACCGGACAAAAGCCATTCAAATGTTCTCAATGTCCATTGTTGTTCACAACAAAGAGTAACTGCGATCGTCATTTGTTACGTAAACATGGTGACGTCGATTCGGCGGTTTCATTGTACGTTCCAATCGATGACATCCCAGATCCAATTACAAAGCCAACACCAGAACCATCTCCACCACCAAAGCCAGTTAGCGCAAATCAACCAATATTGCCACAAATCCAATTGAACATTCCACCATTGAAGAATGACACCTCGCAAATGACAAACACCgatttgccattcaaatgcCACTTGTGCGATGGTTCATTCCAAGACCGTTTCTCATGCTTGGATCACATTAAACTCTATCATTCGCAAGAGTTTGCTTTGTTGCTGTCAAAGGGTGCCATCGAACCAGAGGAAGATATTCAAGCTGTTTCGGCTGAAGaggaaaaagaacaaaatgaaaacggtgGCCGTGGAAAATATCCCGATTAtgcaaatcgcaaagtgatttgtgcattttgtgtACGCCGTTTCTGGTCAACTGAGGATTTACGCAGGCATATGCGTACACATTCAGGAGAACGTCCATTTCAATGTGGCATTTGTATGCgtaaatttacattgaaacaCAGCATGCTTCGCCATCAAAAGAAGCATGCCAACAGCATGCATTCAAATCATCATCAAAGTGCATCCGATTTGTCGGATGATGAACAACAAATgccaacaacaccaccaccaccaaagATTGCATCCGATAAAATGGCATTGCTAGATGCATTACAGAAGACACAAAATTTGACCGAATTGATCGCTAAGaaatttttaatgaacaaaGCATTGGGAGAACGTGATGATGCTGAAAACAGAAGGCCAACAATGTCATCAGAGGGCGGACTCGACACTGAAGAACCATCCGAATTGATTGGAAATCTATTGGGTATCAGCGATTCAAGCATTCTCAACAAAGTCCTTTTGTCATCGGCTGATGAAGCAGCTAAATTACTTGGAGTTGAAAAGTAA
Protein Sequence: MNKQRLSTASESSSVDTMDIDDKIEHSIDSNKTLATKSSTETTMVKKYETSDRETRRTSHDRRKSRGHSETDCNDADIEENEANTEPSNAIVRRENLRQLENSMISLRKSFRFAANNNERVSNNNNNNNNKSTNNNNCKTNNHSKRSQRIGSNENNSDGSNENAKSTQYSCPICGVCSATQHDFTEHIRGHNNSDGSHNYTCQICFKVVSSASSLDRHVLVHTGERPFTCKYCHVTFTTNGNMHRHMRTHKHRDGLTNKGAASAVTSNSSNSSGGSNNNDPNANDTKSNRRTGETYESDGSTDSNASGSGTDGKRKNHDDSYSSIGLKRRLKTINNNNLINNNSINVNSNVQPQRFCCPVCVRNDFLTMISLENHVDTEHPSIQAKCRCCEIVFKSYKALNAHKCAANNKPPHITQGFKDLTFVDFSSEKFPLIAKEACEKSIRTPVTNQKFECPRCYRAFPCSSAVEIHAIKCGANDSKHAISLRKRALSESSEEADTRRRDDFFARLDLKNKHDDLIDSFHSNSGYNSDTDVVEHKKSRISKDDWYSKGLNGEFKDLADIQSMINVSSSGSELLRQLDQPMTSMASSTEQLYSRDEEEQQDAFTAEFRKMKLRGEFPCKLCTAIFPNLRALKGHNRIHLTAAGSGPFRCNMCPYSINDKAALIRHMRTHNGDRPYECAICNYAFTTKANCERHLRNRHGKSTREEVKRAIIYHPSEDSSCDDPVKKMQIFNMSFDEDEMPKDRSTPVSLVKESPNSSAEKVAKIQVKSIDQLTQFNNQATDLSEKDIKPIKLPETKPMDLSMDALDLSKKSASDILNTSDLSLFEKNQQLFLAQQKLLSEALPQIDPAHYFQLSQLYRNLVFPTTGLPLHPFFLQNQLLAQLPTPNFNELKNLMKNDVLSTPTNNMYPNSMFINPIFPTPPNLPQANFPASTLLQEALKQESPPQRSTPPPVQLPLTPQTPRSSRGAQLPQKQPPMRLSSPGPVKMVIKNGVLMPKQKQRRYRTERPFACDHCSARFTLRSNMERHIKQQHPQFWAQRQRSGHNFIRRSSSASLTPTSSMQSQDLSTSSLMDNKNAFNAISDQVKFAILAQQLKCRSNKNFDSMEDQDENDEDAENYKDDIDEPKLFIDEEDDSEPKDLSHKNIKRSLSPSDSNAAAKKIAKNILLEAMSAESHIDAKGDISNRSNRESKDTKEHFDNQNRSRKSSKDESDLVSVSTLVDNATNSVGLGKYFNADCQSNDHSDEEGLVASGSTSEGNNSGTEDPSPNPAEGKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSQCPLLFTTKSNCDRHLLRKHGDVDSAVSLYVPIDDIPDPITKPTPEPSPPPKPVSANQPILPQIQLNIPPLKNDTSQMTNTDLPFKCHLCDGSFQDRFSCLDHIKLYHSQEFALLLSKGAIEPEEDIQAVSAEEEKEQNENGGRGKYPDYANRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCGICMRKFTLKHSMLRHQKKHANSMHSNHHQSASDLSDDEQQMPTTPPPPKIASDKMALLDALQKTQNLTELIAKKFLMNKALGERDDAENRRPTMSSEGGLDTEEPSELIGNLLGISDSSILNKVLLSSADEAAKLLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01288490; iTF_00367546; iTF_01351072;
90% Identity: -
80% Identity: -