Basic Information

Insect: Sitodiplosis mosellana
Gene Symbol: -
Assembly: GCA_009176505.1
Location: VUAH01006165.1:3840013-3865750[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0003 0.018 15.6 2.5 1 23 257 279 257 279 0.97

2 11 0.0018 0.11 13.1 9.5 1 23 285 307 285 307 0.96

3 11 0.00011 0.0065 17.0 6.4 1 23 313 335 313 335 0.98

4 11 0.00075 0.045 14.3 2.3 1 23 341 363 341 363 0.95

5 11 3.1e-05 0.0019 18.7 0.5 1 23 369 391 369 391 0.97

6 11 7.7e-06 0.00046 20.6 0.2 1 23 397 419 397 419 0.98

7 11 0.00011 0.0067 16.9 1.4 1 23 424 446 424 446 0.97

8 11 0.00018 0.011 16.3 0.1 1 23 452 475 452 475 0.94

9 11 4.8e-05 0.0028 18.1 0.1 1 23 534 556 534 556 0.97

10 11 0.018 1.1 10.0 3.5 1 23 655 677 655 677 0.96

11 11 0.0079 0.47 11.1 5.2 5 23 690 708 682 708 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0003	0.018	15.6	2.5	1	23	257	279	257	279	0.97
2	11	0.0018	0.11	13.1	9.5	1	23	285	307	285	307	0.96
3	11	0.00011	0.0065	17.0	6.4	1	23	313	335	313	335	0.98
4	11	0.00075	0.045	14.3	2.3	1	23	341	363	341	363	0.95
5	11	3.1e-05	0.0019	18.7	0.5	1	23	369	391	369	391	0.97
6	11	7.7e-06	0.00046	20.6	0.2	1	23	397	419	397	419	0.98
7	11	0.00011	0.0067	16.9	1.4	1	23	424	446	424	446	0.97
8	11	0.00018	0.011	16.3	0.1	1	23	452	475	452	475	0.94
9	11	4.8e-05	0.0028	18.1	0.1	1	23	534	556	534	556	0.97
10	11	0.018	1.1	10.0	3.5	1	23	655	677	655	677	0.96
11	11	0.0079	0.47	11.1	5.2	5	23	690	708	682	708	0.92

Sequence Information

Coding Sequence: atggcaGCGCAAAGTAATCCGCCAGCGAGTTTTGGGTATACGTGGGGCTTTGCAGACAACTCACGCTCGGATGGCTCacaaattgttgaaatatcaCCGAATATCAATTATACAGTTAGCGATAATATGCCCTACTTGCAGTTAACCGATGGAGGTATCACCGTGCAACAAAAGGACGTGAAGGGAGCTATCGCACACACGAATAAAGGAGTTGTTCGCCGTATGTTTGTCGTCAATGAACCATTTTCACAAGCGTCTACACAAAGCGGCAATTTCCGTGTAATTACGGGTAATGCAGCCTCATCCGTTGGAAAGAAACACGATGTCCTCAGCATTGGATGCGATAAAAACTATCAAACAGATCATTCCCATACTTTAGCCAATGGTATTCTGGACAATAAGACGCAAACCGTTTTAACATCGGCTTCGAAAAATTCGTCGACGTTTATGAGCTCAATCGGAACACTTCAGCTAACACCTGAAGAAtgtaatgaaattttaatgaaacgTGCCGCAGCTGCTGCGCAACACCAAAATCATACGACAATAACGACCACTGATGGACAGCACACAGaTTTTTTAATACGTGAAGGTATTTCGGTGCAAGTGCAAAAAGTGATTCAAGGTTTGGAAGATGCAGACGATTCACAGGCCACATCATCCACACACTGTAAATTGGAACCAGTGCTAGAGATCAATCCAAAAGAGGAAATCTTAACGGCCGAAGAACATGAAATGGCAACGGGCGGTGCGCCCAAAGAACGCCCATACGCTTGTGAAGAATGCGGCAAAAGTTTTTTGCTAAAACACCATTTAACCACTCATGCACGCGTCCATACGGGTGAACGGCCACATGTGTGCGTTCATTGTGGCAAATCATTTGCCCATAAACACTGCTTAAACACACATTTGCTGTTGCATTCAACCGATCGTCCATATCAGTGCAGCGAATGTAAAAAGAGTTTCACACTCAAACATCATTTGCTTACGCATTCACGGGTCCACAGCCGCGAGAGACCATTCATTTGCCAGGAGTGCGGTCGTTCGTTCCCATTGAAACGTCATTTGGTTACACACAGCAAATTCCATGCCGGCGAGCGACCATACGTTTGTGACGAGTGTGGCGAGAGTTTTGCCCAAGAGAACCATTTGATCATGCATTCTCGATTCCACGGATCACTCAATCCATTTGTCTGTTCAGATTGTGGTGCGACATTTCCGCgtaaatttcaattggtcAACCATGGGCGCATTCACGGCCGTGTGCCACACTCTTGCACCGTTTGCGGAAAAGAGTTCTTGCAGAAGCGAACATTGGTGGCGCATATGAGATTGCACACAGGCGATCAACCATATCCATGCACAGCATGCGGTGAAGGATTCCGCACAAAAGCTGAACTCAACCAGCACAATCGTGCTACTCACGGTGGAATCAATCCAAATTCAGCAAACACCACGATCGTTGTGTCTGgatcgcaacaacaacaaatgCGTTATCCTGTGTTACAGCATCAGCCACAAACTGTAACTGTTGTAAGTCAATCAAATAACGGCTTAGTAACTACCATCACATCGCCAGAAACATCACCGAGACCGCAATATGCATGCCGagaATGCGGTCAAGCGTTCAATAGTCGCGAAGCCTTGGCACTTCATCTTCGATTACACACCGGTGACAAGAGCTTAATGACCGATTTATGTGCATTGACTGCTGCATTGCCGGGTCATTTCTTGAGCACGAACACAGGCGCTACTGTGTTAGCATCGAATCATTCGGTTGTCCAGCAGACACCTGTGCCGGTACAAATTTTGTCAAGCGGACAAGTAGTACAACCAATCGTTCAGAACACACAACATcaccaacagcaacagcatcatcaGCAGCACCAAATGGTCCAGCATCACAATAACACAGGCCATCAAAGTGTAGTTGTCACAGCGCCACAACAAAAGCCGAAAACACATTTCTGTACAAGTTGTGGTAAAGGATTTGCTGCCAAACATGGCCTTCTGCAGCACAATCGCCGACATCCGAACGGCGGCTGCACCCTGCGTACCCACGTGTGCGAATGTGGAAAAGCATTTTTCCAAAAGAATCACTTGATGCTCCATCAGCGCCAGCACTTGGAAACAAAACCATCGGTGGCTACGTTGCAACAAcaagcacaacaacaacagATTGTTGTTGAAATTCCACAGGATGCGCAAAATCAACAGCTACAGACACAACAGCAAGCTCAGAATCAGGCGCAACAGGCTCAGAACCAACAAAATAACCAACAGCTGACCACCCGTGAAGTGTTAATCGGAAATCAACCGGTCCATGTGCAGGTTCTGCAAGGAAACACCGCACAAGTaatcaaatatgaaataaacatTCCTCAAGAGAgtcaacaaatcgaatga
Protein Sequence: MAAQSNPPASFGYTWGFADNSRSDGSQIVEISPNINYTVSDNMPYLQLTDGGITVQQKDVKGAIAHTNKGVVRRMFVVNEPFSQASTQSGNFRVITGNAASSVGKKHDVLSIGCDKNYQTDHSHTLANGILDNKTQTVLTSASKNSSTFMSSIGTLQLTPEECNEILMKRAAAAAQHQNHTTITTTDGQHTDFLIREGISVQVQKVIQGLEDADDSQATSSTHCKLEPVLEINPKEEILTAEEHEMATGGAPKERPYACEECGKSFLLKHHLTTHARVHTGERPHVCVHCGKSFAHKHCLNTHLLLHSTDRPYQCSECKKSFTLKHHLLTHSRVHSRERPFICQECGRSFPLKRHLVTHSKFHAGERPYVCDECGESFAQENHLIMHSRFHGSLNPFVCSDCGATFPRKFQLVNHGRIHGRVPHSCTVCGKEFLQKRTLVAHMRLHTGDQPYPCTACGEGFRTKAELNQHNRATHGGINPNSANTTIVVSGSQQQQMRYPVLQHQPQTVTVVSQSNNGLVTTITSPETSPRPQYACRECGQAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLSTNTGATVLASNHSVVQQTPVPVQILSSGQVVQPIVQNTQHHQQQQHHQQHQMVQHHNNTGHQSVVVTAPQQKPKTHFCTSCGKGFAAKHGLLQHNRRHPNGGCTLRTHVCECGKAFFQKNHLMLHQRQHLETKPSVATLQQQAQQQQIVVEIPQDAQNQQLQTQQQAQNQAQQAQNQQNNQQLTTREVLIGNQPVHVQVLQGNTAQVIKYEINIPQESQQIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00285700;
90% Identity: iTF_00367501;
80% Identity: -