Basic Information

Insect: Catotricha subobsoleta
Gene Symbol: -
Assembly: GCA_011634745.1
Location: JAABKK010000767.1:9276445-9282507[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00033 0.028 15.5 2.5 1 23 236 258 236 258 0.97

2 11 0.0019 0.16 13.1 9.5 1 23 264 286 264 286 0.96

3 11 0.00011 0.0096 17.0 6.4 1 23 292 314 292 314 0.98

4 11 0.00079 0.066 14.3 2.3 1 23 320 342 320 342 0.95

5 11 3.3e-05 0.0028 18.7 0.5 1 23 348 370 348 370 0.97

6 11 8.1e-06 0.00068 20.6 0.2 1 23 376 398 376 398 0.98

7 11 0.00012 0.0098 16.9 1.4 1 23 403 425 403 425 0.97

8 11 7.4e-05 0.0062 17.6 0.2 1 23 431 454 431 454 0.97

9 11 5e-05 0.0042 18.1 0.1 1 23 525 547 525 547 0.97

10 11 0.034 2.8 9.2 2.5 1 23 657 679 657 679 0.95

11 11 0.0071 0.59 11.3 5.2 5 23 692 710 683 710 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00033	0.028	15.5	2.5	1	23	236	258	236	258	0.97
2	11	0.0019	0.16	13.1	9.5	1	23	264	286	264	286	0.96
3	11	0.00011	0.0096	17.0	6.4	1	23	292	314	292	314	0.98
4	11	0.00079	0.066	14.3	2.3	1	23	320	342	320	342	0.95
5	11	3.3e-05	0.0028	18.7	0.5	1	23	348	370	348	370	0.97
6	11	8.1e-06	0.00068	20.6	0.2	1	23	376	398	376	398	0.98
7	11	0.00012	0.0098	16.9	1.4	1	23	403	425	403	425	0.97
8	11	7.4e-05	0.0062	17.6	0.2	1	23	431	454	431	454	0.97
9	11	5e-05	0.0042	18.1	0.1	1	23	525	547	525	547	0.97
10	11	0.034	2.8	9.2	2.5	1	23	657	679	657	679	0.95
11	11	0.0071	0.59	11.3	5.2	5	23	692	710	683	710	0.89

Sequence Information

Coding Sequence: ATGCCCTACTTGCAGTTAACTGATGGTGGAATAACGGTACAACAAAAAGATGTCAAAGGTGCCATACATTCAAATAAAGGAGGAGTTGTGCGGCGAATGTTTGTTGTTAATGAGCCATTTACACAAGCAACAACGCAGAGcaATTTTCGAGTTATTACGGGTAATGCAGCGTCCACTGTGACCACAAAAAAACATGACGTATTGAGTATTGGATGcgataaaaattgtaataatttcaataataatgataacatTAATGGTAGTGCAAATAATGCTAATAACGTATTAATTCCTGAGTTTAATCAATCAGACCAATCTAATCATTCTCTAGCCAATGGTATACTGGAAAATAAAACGCAAACTGTATTAACTACGGCTGGCAATAAGACATCCTTTATGAGCCCAATTGGAACACTTCAGCTAACTGCAGAagaatgtaatgaaattttaatgaaacgaGCTGTTGCCGCTgctcaacaacaacaacaacaaaatcataCAACTATTACAACATCTGATGGACACCATACAGGTATATCTGTTCAGGTACAAAAAGTCATTCAAGGTTTAGAAGATGCTGAAGACTCACAGGCAACCTCATCTACACATTGTAAATTGGAGCCGGTTCTAGAAATAAATCCCAAGGAGGAAATTTTAACAGCCGAAGAGCATGAACTAGTGGCTAGTTCAGCTAAAGAACGTCCATATGCATGTGATGAATgtggaaaatcatttttattgaaacatcaTTTAACAACACACGCCCGCGTTCATACAGGCGAACGGCCCCACGTGTGCGTGCATTGTGGCAAAAGCTTTGCCCACAAACACTGCCTAAATACACATTTGCTATTGCATTCTACAGATCGTCCATATCAATGTAGCGAATGCAAGAAAAGCTTTACATTGAAACATCATTTGTTAACGCATTCACGTGTTCACAGccGTGAACGACCATTCATTTGTCAAGAATGCGGTCGATCGTTTCCATTGAAACGACACCTTGTAACACACAGTAAATTTCATGCTGGTGAGCGTCCTTATGTTTGCGATGAATGCGGCGAGAGTTTCGCCCAggaaaatcatttgattatgCATTCTAGATTTCATGGCTCATTGAATCCATTCGTGTGTTCGGATTGTGGTGCAACATTTCCACGTAAATTTCAATTGGTCAACCATGGTCGTATTCATGGCCGTGTTCCACATTCGTGCACAGTTTGCGGAAAGGAATTCTTGCAGAAAAGAACACTGGTGGCGCATATGAGGCTTCACACTGGTGATCAACCATATCCCTGTACAGCATGCGGTGAAGGTTTTCGTACAAAAGCTGAATTAAATCAACATAATCGGTCCACACACGGCGGTATAAATCCAAATTCAGCAAATACAACTATTGTTGTTTCCGCTGCAtcgcaacagcaacagcagcaacaacagcagcaaaCACAATTAgtggTTCAACAACAATCACAGCAGCATCAACAGCAACCACAAACAGTTACAGTTGTCAGTCAATCAAATAATGGTTTGGTAACTATTACATCACCCGAAACATCACCCAGACCTCAATATGCTTGCAGaGAATGTGGTCAAGCTTTCAATAGTCGTGAAGCTTTGGCTCTTCATTTACGTTTACACACTGGCGATAAAAGCTTAATGACCGATTTATGTGCATTAACTGCTGCTCTTCCCGGACACTTTTTAAGTACATCGTCCATAAATCAAGGTACCACTGTTCTAACATCAAATCAATCGGTTGTTCAACAAACACCCGTACCAGTACAAATAATATCTAGCGGTCAAGTTGTACAGCAACAATCAATTGTTCAAAGTCCACAACATCAACATCAGCAGCATCAGcagcaacagcagcaacaacatcaTCAACAAATTGTACAGCAGCAgcaaccacaacaacaacaacagcaggTCGTTGTTTCCACGCcacaacaaaaaccaaaaacacatttttgtgCAAGCTGTGGAAAAGGATTTGCTGCTAAACATGGTCTTTTGCAACATAATCGACGTCACCCAAATGGGAGCTGTACATTACGTACGCATGTTTGTGAATGCGGAAAAGCATTTTTCCAAAAGAATCATTTAATGTTACATCAACGTCAGCATCTGGAGACAAAACCAAATGTTGCTtcattacaacaacaacagcaacaacaacagcaacaatctcagcaacagcaacagattACTGAAAATCAAACCCAACAGGAACAACAACAGTTGCAGACCCAACAACAAGCtcaacagcaacagcagcaacagcaAAATCAACATACACTAACGCGTGAAGTTTTGATAGGCAATCAACCAGTTCACGTTCAAGTATTGCAAGGTAATACAGCTCAAGTTATTAAATACGAAATTAATATTCCACAAGAGAGCGGACAAACGATTGAGTGA
Protein Sequence: MPYLQLTDGGITVQQKDVKGAIHSNKGGVVRRMFVVNEPFTQATTQSNFRVITGNAASTVTTKKHDVLSIGCDKNCNNFNNNDNINGSANNANNVLIPEFNQSDQSNHSLANGILENKTQTVLTTAGNKTSFMSPIGTLQLTAEECNEILMKRAVAAAQQQQQQNHTTITTSDGHHTGISVQVQKVIQGLEDAEDSQATSSTHCKLEPVLEINPKEEILTAEEHELVASSAKERPYACDECGKSFLLKHHLTTHARVHTGERPHVCVHCGKSFAHKHCLNTHLLLHSTDRPYQCSECKKSFTLKHHLLTHSRVHSRERPFICQECGRSFPLKRHLVTHSKFHAGERPYVCDECGESFAQENHLIMHSRFHGSLNPFVCSDCGATFPRKFQLVNHGRIHGRVPHSCTVCGKEFLQKRTLVAHMRLHTGDQPYPCTACGEGFRTKAELNQHNRSTHGGINPNSANTTIVVSAASQQQQQQQQQQTQLVVQQQSQQHQQQPQTVTVVSQSNNGLVTITSPETSPRPQYACRECGQAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLSTSSINQGTTVLTSNQSVVQQTPVPVQIISSGQVVQQQSIVQSPQHQHQQHQQQQQQQHHQQIVQQQQPQQQQQQVVVSTPQQKPKTHFCASCGKGFAAKHGLLQHNRRHPNGSCTLRTHVCECGKAFFQKNHLMLHQRQHLETKPNVASLQQQQQQQQQQSQQQQQITENQTQQEQQQLQTQQQAQQQQQQQQNQHTLTREVLIGNQPVHVQVLQGNTAQVIKYEINIPQESGQTIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00367501; iTF_00133640; iTF_01288456; iTF_01351025; iTF_00957375;
90% Identity: -
80% Identity: -