Smos008647.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- Lztr1
- Assembly
- GCA_009176505.1
- Location
- VUAH01000001.1:12308167-12312161[-]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.2e-14 5.7e-12 45.9 0.1 1 96 374 482 374 498 0.77 2 4 0.1 14 6.0 0.1 73 108 497 532 493 534 0.89 3 4 6.2e-19 8.4e-17 61.4 0.0 8 106 592 692 586 696 0.85 4 4 3.6 4.8e+02 1.1 0.0 77 101 695 719 686 726 0.81
Sequence Information
- Coding Sequence
- atgagTTCGAATTCAGGCAGTGTGtctaaaaagaaaatgtcgatACCAACAAAGCACCAGAAAGTTGTTCTACCGTCAACTTGTACGGGTGAAAATTTGCTGGTCTTAGATTTTTCACCGTTTGAGACCATTTTACAATGGAAGAGAATGCTTGAGTGTGACATCTTTGTCGGAGCAAGACGAAGCAAACATACAACTGTTGCATACAAGGATGCAATTTACGTGTTTGGCGGTGACAATGGCAAAAGCATGTTGAACGATTTAATTCGATTCGATGTGAAAGACAAATCATGGGGCCGCGCCTTTGCAACAGGACTGCCACCAGCACCACGATATCATCATTCAGCTGTTGTGCACGGCAGCTCAATGTTCATCTTTGGAGGTTACACAGGCgacattcattcaaattcaaacctTACGAATAAGAACGATTTGTTTGAGTACAAATTCCAATCGGCACATTGGTCCGAATGGAAGTTCACGGGCAGAACACCTGTGCCACGCAGTGCACACGGTGCAGCGGTATATGACAACAAACTGTGGATTTATGCAGGTTACGATGGAAATGCTCGTTTGAATGACATGTGGACCATCTCATTAATAAAGGGTGACGTGCATCAATGGGAAGAAATTGAGCAGAAAGGTCAACGTCCGCCAACTTGTTGTAATTTCCCGGTTGCTGTAGCCCGTGactgtatgtatgtgttttcgGGTCAAAGTGGTCTTCAGATTACAAATGCATTATTCGAGTTTAACTTCAAGACAAAAACTTGGCGTCGTATCACAAACGACCACATTTTGCGCAGTGCACCACCGCCACCATCTCGGCGGTACGGACACACTATGGTCCATCATGACCGATTTCTGTACGTGTTCGGTGGTTCCGCTGATAATACACTGCCAAGTGATTTGCATTCCTATGACTTGGATGCTCAAATCTGGTCGGTTATCAAACCCGAAGAAGGTTCGGATATCCCACCGGGACGTGTATTCCATTCGGTGTCGGTGATAGGCTCGGCAATGTACATTTTTGGTGGAACAATCGATAACAATGTTAGAAGCAGTGACATGTATCGATTCCagTTCCCCACTTATCCGAGATGTACGCTGCATGATGACTTTGGTAAATTATTTGCCGAGCGTTTATTCTGCGACGTACAATTCATTGTTGGAATGGAAGAAGTGAAAATCCCAGCTCACATGGCCATCGTTGCAGCTCGTTCAGCTGTGTTGAAGGAGAAAATTTTAGTCGCTCGTGCTAAGCTTTTTAGCACAACTGATGTTCCATTTTCTGATCGGCCAATACTCGAAGTGAAAATACCCGATGCACTGCCAGATGCGTTTGAAAAAGTGCTACATTACATTTATACCGATCGCATCGACTTTTCGGATCGAACAGATAACAAAGAAATCGTGCGTCTTATGATGGACATCTTCCAATTGGCAGTTCTGTATTTGATAACACGTCTAGAGAACGTGTCTATTCACTATCTGGAACTGAGAATCTCAAAGAACAATGTTCTTGATGCGTTATACTATGCCGATAAAATGAAtttgaatttGATCAAAGATCTTTGCATGAGTTTCATCGTGAAAGAGGACAATTTCAATGACATTGTGATGACCAATGATTTTGACAATCTGGCCAAGCCACTGATGGTGGAAGTAGTACGTAAAAAAGTTTATCCGGGTCGTATGAATGACATTCGAATCAGCCAACTAATGGGAACGACGTTGGAAAATGACATGGCCACCTTTTTAAAAAGTAGCGGCAGAGAATTTTGTGACATCAACTTGATATTGGACGACCGTGTTATTCCGGcacacaaatcgattttggCGGGTCGATGTTCATATTTTCAGGCTATGTTTAGGTCATTTATGCCAGCGGACAACACAGTAAATATACAAATTGGAGACATTTCACCGTCACAAGAAGCATTCAACTCCCTACTTCGGTATATTTACTACGGAGACATTCGAATGCCACCAGAGGACTCGCTGTATTTATTTCAGGCGTCTTGCTTCTATGGATTAACCAACAATCGATTGCAAGCCTACTGCAAACATAATTTAGAGCACAATATTCATGTTCAAAATGTGCTACAAATTTTGGAAGCATCCGACAAAATGAATGTGCCAGACATTAAGAAGTTTGCCTTAAGTATGATTGTGCGCGATTTCGCGCAAGTGGCACGACTACCAAAGATGAGAAACTTAAACAGACAGTTgctaattgaaataattgaagcGATGGGTGATGTTGTGGCTGAACTAAATCCGAGCAATGATTTGACATCGTccgatatttga
- Protein Sequence
- MSSNSGSVSKKKMSIPTKHQKVVLPSTCTGENLLVLDFSPFETILQWKRMLECDIFVGARRSKHTTVAYKDAIYVFGGDNGKSMLNDLIRFDVKDKSWGRAFATGLPPAPRYHHSAVVHGSSMFIFGGYTGDIHSNSNLTNKNDLFEYKFQSAHWSEWKFTGRTPVPRSAHGAAVYDNKLWIYAGYDGNARLNDMWTISLIKGDVHQWEEIEQKGQRPPTCCNFPVAVARDCMYVFSGQSGLQITNALFEFNFKTKTWRRITNDHILRSAPPPPSRRYGHTMVHHDRFLYVFGGSADNTLPSDLHSYDLDAQIWSVIKPEEGSDIPPGRVFHSVSVIGSAMYIFGGTIDNNVRSSDMYRFQFPTYPRCTLHDDFGKLFAERLFCDVQFIVGMEEVKIPAHMAIVAARSAVLKEKILVARAKLFSTTDVPFSDRPILEVKIPDALPDAFEKVLHYIYTDRIDFSDRTDNKEIVRLMMDIFQLAVLYLITRLENVSIHYLELRISKNNVLDALYYADKMNLNLIKDLCMSFIVKEDNFNDIVMTNDFDNLAKPLMVEVVRKKVYPGRMNDIRISQLMGTTLENDMATFLKSSGREFCDINLILDDRVIPAHKSILAGRCSYFQAMFRSFMPADNTVNIQIGDISPSQEAFNSLLRYIYYGDIRMPPEDSLYLFQASCFYGLTNNRLQAYCKHNLEHNIHVQNVLQILEASDKMNVPDIKKFALSMIVRDFAQVARLPKMRNLNRQLLIEIIEAMGDVVAELNPSNDLTSSDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01288266;
- 90% Identity
- -
- 80% Identity
- -