Smos006751.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- egg
- Assembly
- GCA_009176505.1
- Location
- VUAH01000013.1:374768-379739[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2 8.6e+03 -3.4 0.0 43 58 972 987 961 991 0.71 2 2 1.9e-13 7.4e-10 38.4 0.0 5 74 1002 1065 999 1068 0.89
Sequence Information
- Coding Sequence
- ATGGATTCGAACGAAGTGGGAGAGAAGCCAATATGTGAactagatgaaaaaaatttatcgagTAACATAGATACAGAAGCGTTGAATCCAGATGTTAAAACTGATGCAAATATGTCGAATGACGAGAGTGATGCCATCGGTAGTTCTACCGTCGAAGACAGCAACGTAGAGCCCATTGCAACAGATGCAATGCCGGCAGTTGAAAGcgtagaacaaaaaaaatcagaagataaatcgaaaaatgatcaaCAAGAACATAACAATGACAACGAAGGAGATGATATGGACAGCGAcattgaaaagtttcatacacCTGACGCAACTGACACTGAATCAGTGCAAGATAAATGCGACCAAGACCCCATGGATATTGACGAAATCCTCGAGAGTTTGGACGTGGATCCAGAGGTAGTCGCAAGCGGCGAAGAGTATTGTGAAGCAAAATCACACGCGGCAACTGAGGAGGAACAGCCCCAAATTGACGAGCCAGTCGTCGACAGAATGGAAAATGAAGTAAGGGAGCAAGCTCAGGTGCAGTGCGATGAAGCCATTGATATTCCAAATAAGGAAGAGTCATCAGTGGcggaaattgaacaaattcattCGCCTGCAAAGAATGATATTGATTTGCCCAAAAATCCGATTGAAACGATAGAGAATGAGCTGAAACCGGCTGAAGGTGTGGTGGAATTGGACAAAGAAGCACCCACATCGGATGTCTCAGTTGAATCAGTGAAAGAGGACATTCAAATGCATCAAGATGCAATTGAATCATCGCCAGTGACTGAATCGAACGAAGAAGGCGATGATGTCGTTGCAACAGTCAAAACTCCAGATCAGAATCAGGAGCAAGCTGAACAAAGTGATGACAATAAATTGGAAGACGGATCTGTGAATGAATCggtaaatattttcgatttgatgatggagaatgaaaatttatttgccgGAGCTGATTTGAGCTTAGACGAGTcgatgaaatcaattgaaccCAGTGAAATAATCGAACCCGACGTACCGATGTGTGATGCGGAAACGGGAAACAATTTGGATACTACCAAAACTGAAGAAATTCCTACATTGCCCGAAAGCAGCATAGAAAGTCTACAGGGAAACCTAGACATCACAAGTAAGGAGGGGCAAGTGACAGAAGAACAACtgaaagaagaacaagaagCAAAAGTTGAAACCAATAAAGAGCTCAAGTTCGAACATgccacaaaagaaaaagaagaagtccAAACCAATGAAGTCGAACCGCCATTGAAAGCTGAAGAGCAATTTAAAATCGAAGACAAGAGTCTATTGCGACGCGAATGCTTGAATGGAGAGTGCACAAAGAGCAATGGCTTATTTCACGAAGCACCTGAATTTGTTAtcaatcatttccatttgaataaaCGATCGAAAacgatgtttgtgtgtgaagaATGCTACAATCTCGCCACGGAATCGTACGGTGAGTTGTGTGCTGCATTGGAAGATAAACAACCGCTGTTCTTGAAAAATATCAAGTACTCGGATCTAGTCGAAATCATAGATAGCAgtgacgaagaagaagataaCGATTCCAAGGGAGAAAGACGTGAATCATTCGATGCGGACACTTTGgcattgattgaaaatgaattggagGCAGTGATAAAAGAAACATTGGATAGAGTTGATATTGGACAGCAAATGAGTTGGAATCGTCAAATTTTAACGACGAAAATTGCGAACAATGAAAAGAACTGCGCCGAAATGAtggacgaaatgaaaatattgcaaaaacGAATCGATAAACTGTACACCAATACGTATAATTTCAAGCATTCGTTCTTTGAAGACGTACAATCGCTCGATCTCGTCACTTTGAAACCAACTCAAATATGCAACGAAAGCTATCCACCAGTTGGTGAACTGAAGCACTCAGATATTGAGTATAACACGATGTATTACACATTTCGTCATAAGCTCGTATCACGCTGGCTGCCATGCAAAGTGGTGAACAGAATTGAGACAAATGGCCAGATGGAATACAAGATTCGGTTTTGCCGGGAGAGAAAGGAAGCGGCCAACGTTAGAACGGTGCCACGAAAGTATTTGGCATATGGTCGAGCTTCTAATTATCGTCTGAACATTGGCACTCGTGTGATTGCTTTGTTTGACAATGCCGACAACACtcagaaaatcaaaacttCGCAGTTGCAGAATAATTTCTATCCGGGCATAATTGCCGAACCGTTGACCGTATACACGAATTGGCGATATTTGGTATTTTTCGATGATGGATGGGTACAGTATGTTCACCATGAGGATATCCGTGTCATTTGCGAATGTACCGAAAATGTTTGGGAACTGATCGAGGAACCAGGCGCAAAAACATTCATTGAGGgctatttgaaaaaattcaaacagaaGCGACCCATTGTTCAGGTTCGTCGAGGTCAACGCATCCAAACGGaagtgaatggaaaatggttcAATGCAATTGTGAACGAAGTGGACGCCAGCTTGGTGCAGGTATTTTTCGAAGAGACCAAACGATATGAGTGGATCTATCGGGGCTCAACGCGCCTATTCCCGCTATACAAAAAGCTCAATCACGTGAAAGCGTTCGCAAATCGAAACGAAGCTACAATTGAATACATCGTAATTGACGATGAAAAAGAACCGGAACGAACAACTGAGCCGCCGGTTGAAGAGGTGGCACCAGAACCCAATACACCACCATCAAAAACGGCCCCAATTCTGCGAACGTTTGCATCTCAGGCAGCTCGAGATACACCGCAACAAAAGCAACGCGAACAAAAACGGGCGGTGGCTAAGAAGAGTACGACGCCACAGCCCAAACCAGCCATTCAACACATGAACAATTCAACGATCTATGTGGACGAAGACAAACCGAAGGGTAAAGTAGTGTACTACACCGCCAAGAAGCATatcgatgtgaaaaaatatttgaatcatGAATGTCAGCCCAGTTGCTTGATCCAGTTGAATCATAACTTGGCGTCCTATTCGCCATTATCTAAGCCATTGTTGACAGGATTCGAACGACAGATTTCCAAGACTAGATTCAATAAGAAATATGTCGTTTATCGAGCGCCGTGTGGACGTCGATTGCGAGATATGTCCGAAATGCATAAATATCTACGAATCACCAACTGCAAACTCAATGTGGATAACTTCACCTTTGATCCGTTAATCCATTGTCTGGCTGAGTATGTCATCGAATCGTTTGTGATGAAAAATCCCGATTTATCAggtggaattgaaaaaatgccaATCCAACTGGTCAACTGTTATGACAACAGTATGCCACCGCCATGCACATACTCGGCAAAACGAATCCCAACGGAAGGtgtaaatttgaattgtgatTCCGAGTTTTTGTGCGGCTGTGATTGTACGGATGATTGCTTGGATAAATCGAAATGTGCATGTTGGAAGTTGACATTGCAAGGTTCAAAGTATGGAAATCCAGATACGCCAATCGAAGACATTGGCTACCAGTACAAACGTCTCAATGAACCCGTGCCAACGGGCATTTACGAATGCAACAGTCGATGCAAATGCAAGACCAGTTGTCTAAATCGGGTCGTTCAGCATCCGATACAGTTGAAATTGCAAGTATTTAAAACGGTAAATCGTGGCTGGGGCATCAGATGTTTGAACGATGTTGCCAAGGGTAGCTTCATTTGCTGCTATGCAGGCAACTTGCTGACTGAAAGCAATGCTAATGAAGCCGGTGGAGATTTAgGCGACGAATATTTCGCGGAATTGGACTACATTGAAGTAATGGAAAACATGAAAGAGGGTTATGAACCGGAGGTTGTTCCAGAGGAGAATGAAACATCGGACGAAGACGAAGACTTTGACGTTGAAATGGAATCGAGGCGTACGCGTAACGATGACAGTGATGATGAGTTCGTCTCAAGAAGCTATACCGCAAGCAGTGAAGATTCGGAGAGTCGACGATATCGAACACGAAATTCCGTTGACACACGCAAAAAGTCAGAGGCAGCAACAGCCAAAGATGCGACAAAACGCAAAGATCGGAATAGTTCTTCGGACGATGACGGCGATGAGGTGAGACAAGCGAAAAATTTCATGGCCAGCAACACGATGCCATTGAATGATGATCCAGACGATGAACGATCCAAATCGATTCGGAAATTATTCGGACCGGAAGAATCTGTTTACATTATGGATGCAAAGAAAGCCGGAAATATTGGAAGATATTTCAACCATTCATGCGGACCGAATCTCTTTGTGCAAAATGTCTTTGTTGACACACACGATTTGCGATTCCCGTGGGTGGCATTCTTTGCATCCACGCACATTCGAGCCGGCACCGAACTCACCTGGAATTACAACTACGAAGTGGGCAGTGTCCCAGGCAAAGTGCTCATTTGCCAGTGCGGCGATGAGAAATGCCGTGGCCGTATTTTGTAA
- Protein Sequence
- MDSNEVGEKPICELDEKNLSSNIDTEALNPDVKTDANMSNDESDAIGSSTVEDSNVEPIATDAMPAVESVEQKKSEDKSKNDQQEHNNDNEGDDMDSDIEKFHTPDATDTESVQDKCDQDPMDIDEILESLDVDPEVVASGEEYCEAKSHAATEEEQPQIDEPVVDRMENEVREQAQVQCDEAIDIPNKEESSVAEIEQIHSPAKNDIDLPKNPIETIENELKPAEGVVELDKEAPTSDVSVESVKEDIQMHQDAIESSPVTESNEEGDDVVATVKTPDQNQEQAEQSDDNKLEDGSVNESVNIFDLMMENENLFAGADLSLDESMKSIEPSEIIEPDVPMCDAETGNNLDTTKTEEIPTLPESSIESLQGNLDITSKEGQVTEEQLKEEQEAKVETNKELKFEHATKEKEEVQTNEVEPPLKAEEQFKIEDKSLLRRECLNGECTKSNGLFHEAPEFVINHFHLNKRSKTMFVCEECYNLATESYGELCAALEDKQPLFLKNIKYSDLVEIIDSSDEEEDNDSKGERRESFDADTLALIENELEAVIKETLDRVDIGQQMSWNRQILTTKIANNEKNCAEMMDEMKILQKRIDKLYTNTYNFKHSFFEDVQSLDLVTLKPTQICNESYPPVGELKHSDIEYNTMYYTFRHKLVSRWLPCKVVNRIETNGQMEYKIRFCRERKEAANVRTVPRKYLAYGRASNYRLNIGTRVIALFDNADNTQKIKTSQLQNNFYPGIIAEPLTVYTNWRYLVFFDDGWVQYVHHEDIRVICECTENVWELIEEPGAKTFIEGYLKKFKQKRPIVQVRRGQRIQTEVNGKWFNAIVNEVDASLVQVFFEETKRYEWIYRGSTRLFPLYKKLNHVKAFANRNEATIEYIVIDDEKEPERTTEPPVEEVAPEPNTPPSKTAPILRTFASQAARDTPQQKQREQKRAVAKKSTTPQPKPAIQHMNNSTIYVDEDKPKGKVVYYTAKKHIDVKKYLNHECQPSCLIQLNHNLASYSPLSKPLLTGFERQISKTRFNKKYVVYRAPCGRRLRDMSEMHKYLRITNCKLNVDNFTFDPLIHCLAEYVIESFVMKNPDLSGGIEKMPIQLVNCYDNSMPPPCTYSAKRIPTEGVNLNCDSEFLCGCDCTDDCLDKSKCACWKLTLQGSKYGNPDTPIEDIGYQYKRLNEPVPTGIYECNSRCKCKTSCLNRVVQHPIQLKLQVFKTVNRGWGIRCLNDVAKGSFICCYAGNLLTESNANEAGGDLGDEYFAELDYIEVMENMKEGYEPEVVPEENETSDEDEDFDVEMESRRTRNDDSDDEFVSRSYTASSEDSESRRYRTRNSVDTRKKSEAATAKDATKRKDRNSSSDDDGDEVRQAKNFMASNTMPLNDDPDDERSKSIRKLFGPEESVYIMDAKKAGNIGRYFNHSCGPNLFVQNVFVDTHDLRFPWVAFFASTHIRAGTELTWNYNYEVGSVPGKVLICQCGDEKCRGRIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -