Smos001121.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sitodiplosis mosellana
Gene Symbol
MBD-R2
Assembly
GCA_009176505.1
Location
VUAH01000005.1:1814073-1818215[-]

Transcription Factor Domain

TF Family
MBD
Domain
MBD domain
PFAM
PF01429
TF Group
Unclassified Structure
Description
The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.3e-19 5e-16 58.2 0.1 6 76 402 470 397 471 0.93

Sequence Information

Coding Sequence
ATGGGTCAACGACGGTGTTGTGTTGCTGAATGCAAATCGGCATCACATTTGCCCGAGCACAGTGATGTGAAATTTCATGCGTTTCCAACGAATGACGTTGCCCGAAATATGTGGCTGAAAAATTGTCACATCGAACAAAATCGATCGATAACCAAAAGTAACGTCGTATGCTCGCGTCACTTTCTTGAAACCGATTATCAGGCACCAAAAAATGGTCGACGATTACTCAATTCAAATGCAGTACCGACTATTTTCGCATGGGGTAATCAAAAATCGTTTGCAGAACATTTGGCCGAAGCACAACAATCAAGCCCAACGCTAGATACATCAACCAAAGGAGGAAACACAGATAAAGTGACAAAAACACCGAGTGACACCACTACACCGGTGGGTAAATCGAAAAAGATGATTTCACGGTCGCAAGCAAACAGTGCGGCCGAAAAACAAAGATCGGCCAGCGCTGAAGAACAATCAACGGGTGATTCAAATACAAAAGTTAATGTAGCAAGAAAGTCATTGGATTCAGTTGCAACACCAGAGAAATCAACGGGAAAAGACAATGCTATTAAGTCGCCGAGTAAAAAGTTTGATATTGCGATGCAATTGACACCCGGAGCCAAAGTCGAAGTACAGGATATGAGCGGAAGTTGGCATAATGCCAGCGTTGCTGAGGTGGATCAGGGCGAACAAGAGGTTTTGATtaatttcgagaaaaatgttAAGGCCAAGGGAGCAGGCGGATTCAAACTAAGCGATGAATGGATAGCAATGGATAGCAGCCGATTGCGAATTCCCGTTccgattcaattcaaagaaggTGATCGTTGTTTGGCTCGATGGACTGATTCAAGGAAGTTCCCAGCAACTGTTCTTCGGCCGTTGGAAAACAacAAATACGAAGTGCTCTTCGATGACGGTTACATCAAGCATGTAAAAGGAATTCACATGTCGAAAATTAAGCGACCGGCAAATGACAAAGCACCGACAGATTCACCAGCAACGCCAGTCATACCGATTCCACCGGTTCAAGCCATCAttaaaaaaccattcaaagtCAATACAATCCCGAAGTTTGACGTCAGCAAATTTAATTTGCCTGAAATACCAGAAGGTGAATGGTGTTGCCCGTGGATAAACGACACACCAATTGGTGATGAAGGATTCTTGCTGAATGCGGATGGCACGAAACGGCCAACCGTTCTAGTGCAAGACAACCGTTTGCCGACTGGCTGGACAAAGCATTTGTATCAGCGATCGAGTACATCTGGCAAATGGGATGTTGTGCTTGTCGGTCCAAACAACAAGCGCTTCCGATCAAAAAACGACGTTAAAGTTTACTTGGAAGAAATCGGACAATCGTATAACCCGGACATTTACGATTTTAGCATTCACAAACGTCGTGCAAAAGATATTGGTGTATATGTTTACACGGATGACTATGTGCCGCCGGTTGTCCAAAAGCCATCGTCCGATTTCAAACTAGATTCAAGTCTGGATGCATCATTCCAAGACTTTAAACAAGAGCCATTCACTGGATTCGCACCGAATGAATCGACATCGTCAATTCTGTCAAAGATTACACAAGAAATCAAAGCCGAAACCAGCACACCAATAAAAACCGAAGCAAATGCATCGTTGGAAGAAGGATTCATCTATGTTGGCGCATTGAAAGTTCAACTGATTGATAATTTGTTCCAGTGCCCGAAAGAAGGGTGTGTCAAAACTTTTCGCAAAGAGAACCATTTGCAAATCCATGTAAAACACTATCATCATGAGTTGTCAGAGCAACTGGGCGCTTGTCCAAATATGACTGAATTGGCTTACTTCCGTACAATGCACTCATCCATCGAGGAACCATCgccgaaaaatcaaattcccAATGCACAATTCTTTGAGAAGTCATTCACAGCGGAAATGCGAACGATTCGAAAGTCCATCTCGCCGACACGCGTGAAAATCGAACCGAAATCCGAAGATCAATCGACGCCATTGCCAGCAGCGGCTGGAGAACAAGCGAATGAAGGACTGAAACGAAAGTTAAGCACAAGTCAAATGAGCCCAGAGGTTAAAGAGAAACGCAAACCATCGGCAAATGATAAGGTTACTTCACCGGAGGCTTCTGCAAAATTCAGTACAATCAAAgagattgttgtttttgatgaaatcgaaatggGCTCATCGGCAGCTTCAGTGAAGAAACCAGAAGGAAGTGTTGCAGCTGATTCAAAACCGACAGCTCAAAAGGCGGCAATTCCGCGATTCAAAATCGGTCATGCGGCCAAAATCAAGGCGAACAAAGTTTCGCGACGCAAAGGCAAGACGTTCAAGAAGAAATTCAAGAAATTGGGCAAAGGATTCAAACGAAAGGCGTTTGAAATTCGTGTACCGCTATTGCGTGAAGGTGACGCATTGCCTGGCATTCGTCGTACCGGTGGTAGTTCAAGCTTTGGGACAATTCCGGCTCAATCACGaccaaatcgattgaaatttttacagTACTCATCTACCGACTCCAATTCGGAGAATTCAACAATGGATCCGAATTTCCAGCAGCGTTCCGCATCGAGTTACATCAACGAAAACGGTGAAGTAATCAAAATCGTGCGAATGCGTCAAGAGGAAATTATCAATTGCCTGTGTTCGTATGGCGAAGAGGATGGTTTAATGATTCAGTGTGAATTGTGCTTGTGCTGGCAACACGGCGGATGCAACGGCATCGAAAAAGAAAGCGAAGTGCCGGAAAAGTATGTGTGCTACATTTGCCGGAATCCGGATAGAGCTCGCGAATCGATGCGATACATTCATGATCAGGAATGGTTGTACGAAGGTAAATTGTTCCATGCAAATTATCACCCAGCAAGTCGTCAAGCCCCATTACGCTTCGACATTCTCAAGCAAAGCCACACACTAACCGGCAATCTGTTGGAGCTGAAACGCTCGTTGCATAGTTTGAATGTGAAGATAAACATTGCCGCAAATAAAGATCATCCGAAAATGTATTTGTGGTCAAAGAAATGGGAACAAAGTCCACCGAGAAATATTGAATCGATTGCCGAAGCAAAAGTTGAATTAAAACCCGTTGAGCAAGTGCAAAATAGCCCAGTTTCGGAagctaaaaatgaaattgcgaCTTCTGAAACGAGCACAAAAAGTGCTGATCGTGAAAATAACGTGGCGAAAGGTGATGGAACCGAGCAGACGACATCAAACGAAACAACgcaacaagagaaaaatggGGCAACTGAAACTGCTACGGATAAAAATACTAAGCAGGAAGTAAAAGAGGCAACACATCAACCGCCGAAACAGACACTTTCACCGAAAAAAGTGGCTCGACCAACGCCAAACATCCCTGAACCAGAAGCAGCCATCGACTCGCTTGAATGTCAACATCGTCTCTTGGAACACATTCAGAAGGTACAGAACACGATTCTCTCACGAATGCAAACCATCGATGCACAGATCATGGCATTGGAATCGATGGATGATCATCCGGATACGAATTCAAAAACAGACTTCACCAAAACAAGTCAAACCATACGCATGCTACTTACCGATTTGgccaaaatgcaaaaactcTCCGCGATCAATGAACAAACAGCGCTGTACAATTCGGTTGAACCTACTCATTTTGtatga
Protein Sequence
MGQRRCCVAECKSASHLPEHSDVKFHAFPTNDVARNMWLKNCHIEQNRSITKSNVVCSRHFLETDYQAPKNGRRLLNSNAVPTIFAWGNQKSFAEHLAEAQQSSPTLDTSTKGGNTDKVTKTPSDTTTPVGKSKKMISRSQANSAAEKQRSASAEEQSTGDSNTKVNVARKSLDSVATPEKSTGKDNAIKSPSKKFDIAMQLTPGAKVEVQDMSGSWHNASVAEVDQGEQEVLINFEKNVKAKGAGGFKLSDEWIAMDSSRLRIPVPIQFKEGDRCLARWTDSRKFPATVLRPLENNKYEVLFDDGYIKHVKGIHMSKIKRPANDKAPTDSPATPVIPIPPVQAIIKKPFKVNTIPKFDVSKFNLPEIPEGEWCCPWINDTPIGDEGFLLNADGTKRPTVLVQDNRLPTGWTKHLYQRSSTSGKWDVVLVGPNNKRFRSKNDVKVYLEEIGQSYNPDIYDFSIHKRRAKDIGVYVYTDDYVPPVVQKPSSDFKLDSSLDASFQDFKQEPFTGFAPNESTSSILSKITQEIKAETSTPIKTEANASLEEGFIYVGALKVQLIDNLFQCPKEGCVKTFRKENHLQIHVKHYHHELSEQLGACPNMTELAYFRTMHSSIEEPSPKNQIPNAQFFEKSFTAEMRTIRKSISPTRVKIEPKSEDQSTPLPAAAGEQANEGLKRKLSTSQMSPEVKEKRKPSANDKVTSPEASAKFSTIKEIVVFDEIEMGSSAASVKKPEGSVAADSKPTAQKAAIPRFKIGHAAKIKANKVSRRKGKTFKKKFKKLGKGFKRKAFEIRVPLLREGDALPGIRRTGGSSSFGTIPAQSRPNRLKFLQYSSTDSNSENSTMDPNFQQRSASSYINENGEVIKIVRMRQEEIINCLCSYGEEDGLMIQCELCLCWQHGGCNGIEKESEVPEKYVCYICRNPDRARESMRYIHDQEWLYEGKLFHANYHPASRQAPLRFDILKQSHTLTGNLLELKRSLHSLNVKINIAANKDHPKMYLWSKKWEQSPPRNIESIAEAKVELKPVEQVQNSPVSEAKNEIATSETSTKSADRENNVAKGDGTEQTTSNETTQQEKNGATETATDKNTKQEVKEATHQPPKQTLSPKKVARPTPNIPEPEAAIDSLECQHRLLEHIQKVQNTILSRMQTIDAQIMALESMDDHPDTNSKTDFTKTSQTIRMLLTDLAKMQKLSAINEQTALYNSVEPTHFV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01350740;
90% Identity
iTF_01350740;
80% Identity
iTF_01350740;