Smos006351.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_009176505.1
- Location
- VUAH01000046.1:1270245-1274771[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1 1.9e+04 -6.1 6.9 282 296 97 111 36 142 0.53 2 3 6.1e-105 1.2e-100 336.8 35.2 1 299 160 446 160 447 0.94 3 3 0.012 2.3e+02 1.0 3.9 210 248 466 503 450 521 0.59
Sequence Information
- Coding Sequence
- ATGGATTTATCATCATCACAAATTgacaatcaaaacaataacaacaataacagtaAATCTGACTGTACGCATGATGCGAATCTGACACAAAACCCTGATTCAgacgaacaaaataacaatgcGACAGAATTGTTTGACATCGATTCAAGCGATCTGGAGTATGATTGTTCAGGCAGTGACCAAGATGAAAGCGATAAGAAATCGAAATCCGTAGAAGAAATTGAACGCAGAACTCTTGGTCATGAGGAAATGTCCATTTCAACGATTCCAAACGAACGCCATTCCAATGAGAAACTCACTGATATTCAactcgaacaaacaaacagtaAACAGAATTCATCAAAGCAGGCAAATAACTGTTTAGTACAAGAAgagcaagaagaagaagaagaagaaaaagataaTGTTGCTACGATTGACGATAATGCCGTAGAGGAAGAGCCTATCTTCGATTTTTTAGGCAAAGCCAACGAAATCGCCGAAGCACGTTTGGCACAACGAAGACTTGCTCGAGCAGAGGCACGTGACATTCGTATGCGTGAACTTGAACGCCAGCAAAAAGAGCAAGAACAAAATGCAGATCGAGCATTTGATATGCAAACGGCTGGTTTAGATCCAACGACGCGATCTTCGCGCTTTGCAATGTCATCAGGTGCATTGGGTGCATTACGTAGCGGTGCAATGTCATCACGTCGCAGTAGTGAAGACTCCTTAGAAGAAGAAGGTCGTAGCCTTCGAGACataaaacaagaaataaaGGACATGGAAGAACGGTATAGGAAAGCTATGATAGCCAATGCACAGTTGGATAATGAGCGTGCATCAAATACATATCAAATTCAGTTGTTAAAAGACAAAGTGGAGGAAATGGAAGAGATCCATGCCCAACTTCACCGCGAACATAAAGAGAAATGTCGACAATTCGATACATTAAagcgaacaaatgaaaaactaatgGAAGACTTGAGATTAGTTCAAGGTCAATTGAATGAGCGTGACACACTTATAGCTAACGAAGGGATGACAATAGTTTCCATTGAGAACGAGGATGGCTCAGACGCAAGGCGAGCTCTAGTCAGTGCGGAAAATGCACAATTATTAGACACTCATCAAGGCTCTTTAGATGTgcgattgaaaaaattcaccgAAGAGAAACAAGCATTGAGAACTGAGATCGAGCAGCTACATCAACAACTGATCGCTGCCAAAACACAGAGGCGGTCCGGATCCCAAAACGGACCCGTCGACGATGAAGACTACGAGGATGCTCAGAGAGAGGCAAACAAGTTAATATCAGATTATAAGTATAAATTGACGAAATCTGAACAGGAAATAGCTAGTTTACAAGCAAGCCTGGCACGTTCAGAGACTCAAGTAATCCGCTACAAGAGTACGGCAGACGCTGCCGAAAAAGTTGAGGCCGAACTCAAAATTGAACGACGGAAACTTCAGCGAGAGAATCGagaaatgatggaaaaactGGAAGAGCTAGAAACATCTCACAATCATTTGCTGAAACGCTTGGATAAACTGAAGAATGCAAAAAGTACTCTCCTCAAAGAATTATga
- Protein Sequence
- MDLSSSQIDNQNNNNNNSKSDCTHDANLTQNPDSDEQNNNATELFDIDSSDLEYDCSGSDQDESDKKSKSVEEIERRTLGHEEMSISTIPNERHSNEKLTDIQLEQTNSKQNSSKQANNCLVQEEQEEEEEEKDNVATIDDNAVEEEPIFDFLGKANEIAEARLAQRRLARAEARDIRMRELERQQKEQEQNADRAFDMQTAGLDPTTRSSRFAMSSGALGALRSGAMSSRRSSEDSLEEEGRSLRDIKQEIKDMEERYRKAMIANAQLDNERASNTYQIQLLKDKVEEMEEIHAQLHREHKEKCRQFDTLKRTNEKLMEDLRLVQGQLNERDTLIANEGMTIVSIENEDGSDARRALVSAENAQLLDTHQGSLDVRLKKFTEEKQALRTEIEQLHQQLIAAKTQRRSGSQNGPVDDEDYEDAQREANKLISDYKYKLTKSEQEIASLQASLARSETQVIRYKSTADAAEKVEAELKIERRKLQRENREMMEKLEELETSHNHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -