Smos006070.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- -
- Assembly
- GCA_009176505.1
- Location
- VUAH01000026.1:77739-80025[+]
Transcription Factor Domain
- TF Family
- HMGA
- Domain
- HMGA domain
- PFAM
- AnimalTFDB
- TF Group
- Unclassified Structure
- Description
- This entry represents the HMGA family, whose members contain DNA-binding domains, also known as AT hooks due to their ability to interact with the narrow minor groove of AT-rich DNA sequences. They play an important role in chromatin organisation [1]. The high mobility group (HMG) proteins are the most abundant and ubiquitous nonhistone chromosomal proteins. They bind to DNA and to nucleosomes and are involved in the regulation of DNA-dependent processes such as transcription, replication, recombination, and DNA repair. They can be grouped into three families: HMGB (HMG 1/2), HMGN (HMG 14/17) and HMGA (HMG I/Y). The characteristic domains are: AT-hook for the HMGA family, the HMG Box for the HMGB family, and the nucleosome-binding domain (NBD) for the members of the HMGN family [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0018 35 4.3 4.5 8 16 116 124 115 128 0.84 2 10 0.17 3.3e+03 -2.0 7.5 11 21 172 182 170 183 0.79 3 10 0.46 8.8e+03 -3.4 0.4 13 19 201 207 201 208 0.84 4 10 0.011 2.2e+02 1.7 5.9 3 21 311 329 309 330 0.86 5 10 0.0064 1.2e+02 2.5 3.0 9 15 346 352 346 353 0.94 6 10 0.02 4e+02 0.9 5.3 9 15 419 425 418 426 0.91 7 10 1.3e-09 2.6e-05 23.9 2.0 8 19 438 449 434 451 0.93 8 10 0.84 1.6e+04 -4.2 1.2 8 18 468 478 467 480 0.72 9 10 0.74 1.4e+04 -4.1 9.7 8 20 521 532 520 534 0.81 10 10 3.6e-07 0.007 16.1 5.7 10 21 611 622 604 622 0.95
Sequence Information
- Coding Sequence
- ATGTGTTTAACATACGATCAAATTGAACAGGCATGTGGATTTTTGGTGCGTGGCGAATTTAACACATTTCTTTATTGCTGCAAAGTTTGCCgtgttgaatttgaatcgGGCCCACACTTGGAATCACACATTTTATCAGAGCATGATGATGACAAAAGTGGCATTTTGACGAATGATGGTTTTATGGACGAATCAATATCGACCGATTCACCAATTGAAATCGATCCGACAAACGTCAAAATTGAACCGGATGATCCGATTTATTTGGTCGAAGACGATTTTAATGATGATTTTAATGATTCAGCAGCTGTTGAAGTGATTGTTCCAAGAAATTCGGCGGTTGTTCCAAAACGACCAGTCGGACGGCCACGGAAGAATAAACATTTGATTGATATCCCGGTGGAAAGTAAATATGGTACACGAAATGCTGGAGCATTCAAAGAAGGTATTTACAACTACGATGCCAATGACAGAGGCGATAAATTTGGTGGTTATGCTAACGTCGGTAAAAGACGACCAGGACGACCACGTGGAGCaaaagataagaaaaaacgcaGAGGTAGAAGAAACCTGTTGGTTGATGATGAGAGCAAATATTTTGGTCGACCTTCATCCAGTAAACATGACAATTTGAACAGCAAAACAGTCAAAGCAGAACGGCAAAGAGGTCAGCAATTGAAAGCAATGAACGAAGGAATGAGCAGCGACGATGAACCAACACAAGTGAACACCAATGGACTTGAAAGTGTGTTACAGCATCGTTTGTCGGGTAATCGGAAGTGGCGACACGATGCCAGCAATGACGAATTTGGCCATGTCGACGTTGGAAACAGCGACAGAAATTGTAAATGGAATAACAACCACAATTACATTGATGACGACAGCGATATTTTTGATGATTTGGATGGAGGTGAGCCGAGCCAACACCGAACTCAAAATCCAGTCGGTAAACGTCGACCAGGACGGCCGCGTGGAGCgaaagataagaaaaaacgTGCCGCCAGAACATTTGCATCGGTCAGCGGATCGATTCTAAAGAAACCACGAGGTCGACCGTCAATGAAACAAGAATTGACACCGTACAATGATGGCCACAGCTATGAGCCAATCTCAACTGAAAATCATACTCACCGTCCAAAAGCCGAAAAAAGTGTTGCAACTCTCAGTCAATcagatttcaatttcagctATGCTGAACCATTCAACGCCGGTGAAGATATGCCATTCGATGTTAAGTCGGGAATTCTCGTTGCTAAAAAACCACGAGGTAGACCGCGCAAACACCCAAAACCTGCCGTTGATGTCACAATTCCGAAACGACCACGAGGTCGACCACGGGGCTCAAAGACTCAAAAACACTATCACAGTGATATCGTTGGTGTGGATTTTGAAGAATTGCCGCCACAAAGACTGCGAGAAAGGCCATCGGGTCAACGAAATTGGATCGACGATGACAGTGGAAGCGATAGCAACAGCAAACGTGGTAACGATGGTGGCGAAAACCAAAGCCATGTCAATATTGGTGAATCAATTTTATCCAATGCTATATGTTCAATTGGTCCGAAGCGACGCGGCAGACCGCCTGGCctgaagaagaacaaaatcaTCAATCTTAGACCGATCAAAATCGAATTAGATGATTCAGTTGCATACGAGCCAAGCGATCAACCACTCGAAATAAGCAACTGGCCGACAGAGCACGATAGTCAAGCGGCTTCTACGAGCATTAGCAACTTCTGCAAACCATTCGAAATCCAACTTGAAGACATCTACAGCTCAAACCAAGTGCAAAATTGGCTCGAACCAACATCCGGATCTGAATCGACTTCTAGACCGAGAGGACGTCCGCCTGgatctaaaaataaataccacTAA
- Protein Sequence
- MCLTYDQIEQACGFLVRGEFNTFLYCCKVCRVEFESGPHLESHILSEHDDDKSGILTNDGFMDESISTDSPIEIDPTNVKIEPDDPIYLVEDDFNDDFNDSAAVEVIVPRNSAVVPKRPVGRPRKNKHLIDIPVESKYGTRNAGAFKEGIYNYDANDRGDKFGGYANVGKRRPGRPRGAKDKKKRRGRRNLLVDDESKYFGRPSSSKHDNLNSKTVKAERQRGQQLKAMNEGMSSDDEPTQVNTNGLESVLQHRLSGNRKWRHDASNDEFGHVDVGNSDRNCKWNNNHNYIDDDSDIFDDLDGGEPSQHRTQNPVGKRRPGRPRGAKDKKKRAARTFASVSGSILKKPRGRPSMKQELTPYNDGHSYEPISTENHTHRPKAEKSVATLSQSDFNFSYAEPFNAGEDMPFDVKSGILVAKKPRGRPRKHPKPAVDVTIPKRPRGRPRGSKTQKHYHSDIVGVDFEELPPQRLRERPSGQRNWIDDDSGSDSNSKRGNDGGENQSHVNIGESILSNAICSIGPKRRGRPPGLKKNKIINLRPIKIELDDSVAYEPSDQPLEISNWPTEHDSQAASTSISNFCKPFEIQLEDIYSSNQVQNWLEPTSGSESTSRPRGRPPGSKNKYH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -