Smos006940.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- SMARCC2
- Assembly
- GCA_009176505.1
- Location
- VUAH01000021.1:123564-128821[+]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-14 2.3e-11 43.7 0.2 3 44 674 715 672 717 0.95 2 2 6.5 9e+03 -3.0 0.0 5 18 947 960 945 961 0.84
Sequence Information
- Coding Sequence
- ATGGCTCTCTTAGGACCAAAAAAGGATGGTGGTCCGAATACGGAGTTTTTTCAATCGCCGGAATCGATGCAGGGATTCGAGCAAGTGCGACAATGGCTtcagaaaaattgtaaaaaaTACGTTCAATCAGATCCACCGACAAAGGAATCGCTGTCACAAttgctcatttcattcatacaatttcaagAGACTCGATTCGGCAAAGGTGCATCAGAACCACCGATAATGCGTTTGCCAATGCGATGCTTCTTGGATTTTAAGCCCGGCGGCAGTTTGTGTcacattttttcgaatatgtATCGCTACAAAGCCGATCAACGCTGGCGCAAATTCGAGTTCAACGTAACCAAGACAGCACGCAAAGATAAGGATCCAAACATTCAAATGGCTACTGAAATTCTGGAGAATTTAATCGATCAGGAATGTTTCCGATTGCCAACAGCGTTCATTCGACCCGAAGTCGATGAGGATTTGCGTGAAAAAATCACTGAAATTCTGAAGGATCATCAATGTGAAATTACCGAAGATGAAGATCAAGCGTCGCACATCATTTACCCAGACATTGATCCATTGCCAGATGATTATGCACGACCATCGTTCAAACGGGGAAAGAATGTAATGATGCATTGGTACTACTTGCCCGAATCGTATGATTCATGGGTGTCAAACACGTTCGAACTACCGGATGACGTTCCTGAAACCATCAATCCACCCCCGAATACATGGCGTGTATCAGCCGCATGGGTTTTGAATTCACAAGAGTACAATGAATGGATGGCCGAAGAAGATTATGAGGTTGATGAAAGTGGCAAGAAATTGGTTCACCGTCACCGATTGTCCGTGGAGGATTTGATGCAAGATGAAAAACGTACCGGCAAAGCAGCTGGCAAGCAAAAGAGAAAGCGATCCCCATCGCCAGCACCGAAAGGTGTTGGAAAACGTAAGTCTGGTCGATCACCGGCAGTTGTATCGAAGAAAGCTCGTGGCACGGCCGACATCGAAGATGAGGAAGATTTAACTCGTGATATGGACGATCCACCAGCTGAGCCAAATGTCACTGAAGTCATTGCGAAACCATCGACAAACAGCCCGGCCACTCAGTCAAATAGCAAACAACGCGGTGCTGACAGCGATATGTTGCCATTGAAAAGCAGTGTTGTTACTGATTTGGACGAGGAGACGGAGAGAAGCGGTGGCTCCGGCACACAAAACAACGTTGCTGCTAGTGGTGAGGATTCACAAACGGGAAAAACCAGTGAGAATAGTAACACTCAAGAGTTCCCAGGCAATCGCGATGATCTCGAAGACAATGTTACCGAACAGACACATCACATCATTGTGCCATCGTATTCGGCTTGGTTCGACTACAATTCGATTCATGTCATTGAAAAGCGTGCAATGCCggaatttttcaatggtaaaaataaatcaaaatcccCGGAAATTTATATGGCCTATCGAAATTTCATGATTGACACATATCGTTTGAATCCAACGGAATATTTAACGAGCACGGCATGTCGTCGCAATTTGGCCGGTGATGTGTGCGCCATTATGCGAGTGCATGCATTTTTGGAGCAATGGGGTTTGGTTAACTATCAAATCGATGTTGATGCACGGCCAACACCAATGGGACCACCGCCAACATCACATTTCCATGTGCTCAGCGACACTCCATCTGGTCTGCAGCCATTGAATCCACCAAAAACCACTCAACCATCAGCTGCCAAAACGCTGTTTGATCTGGACAaaattaagaaagaaaaagaaggacAAGTCGTCAATGCTGAAGGTACAATTCCTTCAGCCGTTCCGGCGCCAGCAACACCAGGCAATCCAAATAACCCAATTGTTCCACCTACGGGAGCCATTGCAGTACCTGGTGCTGTTGTTGGCGGCCCAGGACCGATCAAATTAGAGAATTCAATTGAACCCGGTGCTCATTTCGGTTTGCGAATGGATCAATATGCTAAAAAACCGATCGCaatgcgaaacaaaaacgCTGCCAGCATGGCACGTGAATGGACCGAACAAGAAACATTGTTGCTGCTTGAAGGCTTGGAAATCTATCGCGACGATTGGAACAAGATTTGCGAACATGTCGGCACACGTACACAAGACGAATGTATCTTACACTTTTTGCGTTTGCCCATTGAAGATCCATATCTTGAGGATGATTGCGGTTTCTTGGGCCCACTCGCCTATCAACCCATTCCATTCAGCAAATCGGGCAATCCAATCATGTCGACAGTCGCATTTCTGGCATCGATTGTTGATCCACGCATTGCAGCCGCCGCTGCTAAAGCTGCTATGGAAGAGTTTGCTTTGATTAAGGAGGAAGTTCCACCAAATGTCTACTATGCTCACTATAAAAATGTTGAGAAATCATTGGTCAACGGAAAATTCGATCCAACTGCCGGATTGGCAAGCAGTGGAATTGCTGGCACTGCTCCTGATAAAGAGGAcgaagagaacaaaaacacGGACGAAGAAATGAAAGATGTTTCGAAGAAAGATGGCGataaagagaaagaagGTGGTGATAAAGATAAAGAAAGTAAAGACACtgataaagaaaaagagaaggagaCGGAAAAAGAGTCGGATAAACCGGCTAGCGATgagaataaatcaaatgattccTCTTCTACTAACGTTCCagccaatgaaaaaatggacaCATCCGACAAATCGGCCGAAGCCGCCACCGAAAATGGTACAGCTGTGAATGGAAATGACAAGGATTCAGAGGAAAATCGGAAACTATTCAACGAAACCGATCTACAGAGAGCCGCATCGGCTGCACTTGCATCAGCTGCCGTCAAAGCAAAACACATGTCAGCACTTGAAGAGCGAAAGATCAAGAGTTTGGTCGCATTACTTGTGGaaactcaaatgaaaaaacttGAAATTAAATTGCGCCACTTTGAAGAATTGGAAACTACAATGGAACGGGAACGAGAAGGTCTTGAATATCAACGTCAGCAGTTGATCACTGAACGCCAGCAATTCCATTTGGAACAATTGAAAGCAGCCGAGTTCCGTGCTAAGCAGAACGCTCAGCATCGATTGCAGTTAGAGCAACAAGGTCAATGGCAGCCACCACCACAGAATCCAAGTTTAGGCCAAGCaccgcaacaacaaccaccaccatcatcatcgcaTCCATTGCATCCGAGTGTGAATGGGCCAGCAGCACCAGTTCCACAACAACCGGTTAATCCGAATCCGGTGAATGCAGTTCCAGCGCCAAATGCAACGACACAATCGACTAGTGAAGTACCTCAACCAGTTCAACCGCAACAACAGCCACCGCAAtcacaacaaccacaacagcCGTCACAGCCAACACAGGCAAGCAGCGCAGTCCCAACCGCACCAACAACGATACCACCAGCAAATGTGGTGCTTCCGACAACAGAGCCACCAGCTAGCGTTCCGGCCACGGAAACACCACCAGCCGCTGTCGCCAATCCGACTCCAGCTGTTTGA
- Protein Sequence
- MALLGPKKDGGPNTEFFQSPESMQGFEQVRQWLQKNCKKYVQSDPPTKESLSQLLISFIQFQETRFGKGASEPPIMRLPMRCFLDFKPGGSLCHIFSNMYRYKADQRWRKFEFNVTKTARKDKDPNIQMATEILENLIDQECFRLPTAFIRPEVDEDLREKITEILKDHQCEITEDEDQASHIIYPDIDPLPDDYARPSFKRGKNVMMHWYYLPESYDSWVSNTFELPDDVPETINPPPNTWRVSAAWVLNSQEYNEWMAEEDYEVDESGKKLVHRHRLSVEDLMQDEKRTGKAAGKQKRKRSPSPAPKGVGKRKSGRSPAVVSKKARGTADIEDEEDLTRDMDDPPAEPNVTEVIAKPSTNSPATQSNSKQRGADSDMLPLKSSVVTDLDEETERSGGSGTQNNVAASGEDSQTGKTSENSNTQEFPGNRDDLEDNVTEQTHHIIVPSYSAWFDYNSIHVIEKRAMPEFFNGKNKSKSPEIYMAYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLVNYQIDVDARPTPMGPPPTSHFHVLSDTPSGLQPLNPPKTTQPSAAKTLFDLDKIKKEKEGQVVNAEGTIPSAVPAPATPGNPNNPIVPPTGAIAVPGAVVGGPGPIKLENSIEPGAHFGLRMDQYAKKPIAMRNKNAASMAREWTEQETLLLLEGLEIYRDDWNKICEHVGTRTQDECILHFLRLPIEDPYLEDDCGFLGPLAYQPIPFSKSGNPIMSTVAFLASIVDPRIAAAAAKAAMEEFALIKEEVPPNVYYAHYKNVEKSLVNGKFDPTAGLASSGIAGTAPDKEDEENKNTDEEMKDVSKKDGDKEKEGGDKDKESKDTDKEKEKETEKESDKPASDENKSNDSSSTNVPANEKMDTSDKSAEAATENGTAVNGNDKDSEENRKLFNETDLQRAASAALASAAVKAKHMSALEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQLKAAEFRAKQNAQHRLQLEQQGQWQPPPQNPSLGQAPQQQPPPSSSHPLHPSVNGPAAPVPQQPVNPNPVNAVPAPNATTQSTSEVPQPVQPQQQPPQSQQPQQPSQPTQASSAVPTAPTTIPPANVVLPTTEPPASVPATETPPAAVANPTPAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01288065; iTF_00367162; iTF_00133181;
- 90% Identity
- -
- 80% Identity
- -