Smos013129.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- retn_1
- Assembly
- GCA_009176505.1
- Location
- VUAH01006225.1:19147883-19153195[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-17 1.2e-13 51.4 0.1 29 89 4 62 1 62 0.93 2 2 7 1.9e+04 -3.9 0.0 7 19 302 314 297 321 0.72
Sequence Information
- Coding Sequence
- ATGGCCAAATCTGTGCTGGATTTATACGAACTGTACAACTTGGTGATAGCCCGTGGCGGTCTCGTTGATGTTATCAACAAGAAATTGTGGCAAGAAATTATCAAGGGCTTGCACTTACCATCAAGCATTACTAGTGCTGCCTTCACACTCCGAACACAGTACATGAAATACTTGTATCCATATGAGTGTGAAAAGAAGAATTTAAGCACTCCGGCTGAACTACAAGCAGCCATTGATGGAAACCGCCGTGAGGGAAGACGTTCCAGCTACGGTCAATTTGATACACAAATGCAAGGGCAACTCCAACAATTGCAACAGGTACAACGGTCACCATTACCAGGCGGTCTACAACAAATGTCTCCATTGTCATTGGTATCGCATGGTGCcacacaaaattcacatcaCCGCTTGCTCGGCAATCAACAAATGGGCTTGCTGCCAAACCAAATGTCGGATCTTTATGAGTATTTCAAACTTTTGCAACAACCAAAAGAGGCTGCACgTCCACAAAGTCCAGATTGCATTCGAGCTGATACATTAAACGCATTGGAAATGTCACGCGTTGCACTTTGGTCAATGTACAATAATAATACCAGCCCACCAACGTCCAATAACACAACTAGTCCACCCAACAATGAACCACAAAGAGAGGCATTGAACCTAACCGAATCACCAACACATGGAATTAAACGTGAACGAGACACCGGCAATGATTTTGATCGTGAGGAACGTGACTATGTGCTGCCATCAAAGAAAGTCGCTCTACAACAATTACACTCACAGTTGCAACAGTCCCAACGCGTTTCACCGCACAACCATTACAATCATGAGCATCGTCGCCGTTCTGAAACACCTCCGTCGCCAAATCATCGTAATCGGTCAATTGAACGTGATGAACATCGAAATGGCCTATTGAGTTTTCATAATAGCCAAAATCATTCATCATCACGCCGGCACATGTCCGCCTCACCGCCATCGTCAAATCATCGAAATGGTACAAATAATACAAGTCATAATGGCAGCAATGATCTCCTCAATGCCTGCAGTCCACTCGCACTTCTGTCTGGCatgcaattcaaattgtttagCCGAGGTTCCGAATCGGGTGAACAACAATTGGTTGTTTCAATGGAACTGAATGGTGTACAATATGAGGGTGTTCTATTTGCGAATCGTGTAAATGCAGCCCAATCAACGAGCCCAACATCATCACCACCGTGTACACCAAGCAAAATCACACCGACCACCACATCGAGTGGTGCGAGTGCCAGCAGTCCGATGGTTGAAGACAGGCCGAATCGTGGTGTTCCAACGGTTACGCGTCCATTAGTTTCATCTTAA
- Protein Sequence
- MAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQFDTQMQGQLQQLQQVQRSPLPGGLQQMSPLSLVSHGATQNSHHRLLGNQQMGLLPNQMSDLYEYFKLLQQPKEAARPQSPDCIRADTLNALEMSRVALWSMYNNNTSPPTSNNTTSPPNNEPQREALNLTESPTHGIKRERDTGNDFDREERDYVLPSKKVALQQLHSQLQQSQRVSPHNHYNHEHRRRSETPPSPNHRNRSIERDEHRNGLLSFHNSQNHSSSRRHMSASPPSSNHRNGTNNTSHNGSNDLLNACSPLALLSGMQFKLFSRGSESGEQQLVVSMELNGVQYEGVLFANRVNAAQSTSPTSSPPCTPSKITPTTTSSGASASSPMVEDRPNRGVPTVTRPLVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00133013;
- 90% Identity
- iTF_00133013;
- 80% Identity
- -