Smis007456.1
Basic Information
- Insect
- Sitobion miscanthi
- Gene Symbol
- -
- Assembly
- GCA_008086715.1
- Location
- Lachesis:35894053-35910799[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.094 5e+02 0.8 0.0 35 51 216 232 212 234 0.77 2 11 0.0022 12 6.0 0.0 23 43 232 252 228 257 0.90 3 11 0.38 2e+03 -1.2 0.0 27 44 292 309 288 317 0.85 4 11 0.013 68 3.5 0.0 23 48 316 341 311 346 0.84 5 11 0.015 77 3.4 0.0 23 51 344 372 340 375 0.84 6 11 0.053 2.8e+02 1.6 0.0 23 50 372 399 368 402 0.83 7 11 0.0015 7.7 6.6 0.0 23 48 400 425 395 431 0.84 8 11 0.021 1.1e+02 2.9 0.3 23 44 428 449 421 458 0.87 9 11 0.12 6.6e+02 0.4 0.1 26 52 459 485 454 486 0.84 10 11 0.011 56 3.8 0.1 23 52 484 513 480 515 0.86 11 11 5.7e-05 0.3 11.1 0.2 22 50 539 566 536 570 0.82
Sequence Information
- Coding Sequence
- ATGGAACCATTAAGAACATCTATGAATTATTCTGAAGTAAATTTTAATTCTAGTGTGCTGACTATTCCACTTATTAGATGTGATGACCCAGCATTCAATAGAGTTATTAAACAAGAATTTATTTATGATACAGACAATAATGATGATAATCAATTATTACAAATGGGAGCTAAATGCGAATTTGAAGAAGAAATAAATACAACTGATACAAAAGTAAAAATTGAAAAAAATTTGAACGTCGGTTTTGTGTTTGAAGGATCAGTTAAAACCGAATGCCAATCTTTGGAACTAATTATTAATAAGAATTCCGACAAGACATCGAACTTAAGGAAAACATTTTCAAATTTGGGTGAATTTCAGGTCAATAATAAGTTTCAAACTAATCATAATAATCAAAATTGCAATGTATCTGATAAATTATTGAACTCAAAAGCACTATTCACAAAACATCCGAAGATTCACATCAGCAAAAGAAAACAACAGTTTGTTTGTGACAATTGTAAAGAGTCGTATTATTCTAAATCAGATTTAATTACACACATATTGTGTTGTATGCGAGTAAAGCTCTATAAATGTGATATATGTGATCGAAGGTTTTCTGAAGCAGGATATTTAAAAATGCATAAAATGATACATGATAGATTTTCTCAATCAGGAAATTTAAAAAGGCATAAAATGATACATGATGGAGTAAAACCATATGAATGTGATATCTGTGACAGAGTGTTTTCTCAAGCAGGACATTTAAAAAGGCATAAAATGACACATACCGATGTAATACTATATAAATGTGATATCTGTGACAGGGAGTTTTCTCATGCAGGACATTTAAAAAGGCATAAAATGGTACATGATGGAGTAAAGTCATATGAATGTGATATCTGTGACAAAGGGTTTTCTCAAGCAGGACTTTTAAAAAGGCATAAAATGATACATACCGATGTAAGACCATATAAATGTGATATCTGTCACAGAGGGTTTTATAGATCAGGAAATTTAAAAACGCATAAAATGATACATGATGGAGTAAAGCCATATAAATGTGATATCTGTGACAAGGAGTTTTCTCAAGCAGGACATTTAAAAAGGCATAAAATGATACACGATGGAGTAAAGCCATATGAATGTGATATCTGTGACAGAGGGTTTTCTCAAGCAGGACTTTTAAAAAGGCATAAAATGATACATGATGGAGTAAAGCCATATAAATGTGATATCTGTGACAGGGAGTTTTCTCAAGCAGGAAATTTAAAAAGGCATAAAATGGTACATGATGGAGTAAAACCATATGAATGTGATATCTGTCACAGAAGGTTTTATAGATCAGGACATTTAAAAAGGCATAAAATGATACATGATGCAGTAAAGTCATATAAATGTGATATCTGTGACAGGGAGTTTTATAGATCAGGACATTTAAAAAGGCATAAAATGATACATGATGCAGTAAAGCCATATAAATGCGATATCTGCGACAGGGAGTTTTCTCAAGCAGGACATTTAAAAAGGCATAAAATGATACATGATGCAGTAAAGCCATATAAATGCGATATCTGTGACAGAGGGTTTTCTCGAGCAGAAACTTTAAACTTGCATAAATTGATACATACTGGTGAAAAATCGTTTAAATGTAATATCTGTCAAAGAGTGTTTTGTCAAGAAAGAAATTTAAAAAACCATAAAATGAAACATGTTGCAGTAAAGCCACAATAA
- Protein Sequence
- MEPLRTSMNYSEVNFNSSVLTIPLIRCDDPAFNRVIKQEFIYDTDNNDDNQLLQMGAKCEFEEEINTTDTKVKIEKNLNVGFVFEGSVKTECQSLELIINKNSDKTSNLRKTFSNLGEFQVNNKFQTNHNNQNCNVSDKLLNSKALFTKHPKIHISKRKQQFVCDNCKESYYSKSDLITHILCCMRVKLYKCDICDRRFSEAGYLKMHKMIHDRFSQSGNLKRHKMIHDGVKPYECDICDRVFSQAGHLKRHKMTHTDVILYKCDICDREFSHAGHLKRHKMVHDGVKSYECDICDKGFSQAGLLKRHKMIHTDVRPYKCDICHRGFYRSGNLKTHKMIHDGVKPYKCDICDKEFSQAGHLKRHKMIHDGVKPYECDICDRGFSQAGLLKRHKMIHDGVKPYKCDICDREFSQAGNLKRHKMVHDGVKPYECDICHRRFYRSGHLKRHKMIHDAVKSYKCDICDREFYRSGHLKRHKMIHDAVKPYKCDICDREFSQAGHLKRHKMIHDAVKPYKCDICDRGFSRAETLNLHKLIHTGEKSFKCNICQRVFCQERNLKNHKMKHVAVKPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01350303;
- 90% Identity
- iTF_01350303;
- 80% Identity
- iTF_01350303;