Basic Information

Insect: Sitobion miscanthi
Gene Symbol: -
Assembly: GCA_008086715.1
Location: Lachesis:27179509-27189012[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.49 2.6e+03 -1.5 0.0 22 43 17 38 12 43 0.84

2 17 0.0012 6.4 6.8 0.0 21 45 44 68 34 77 0.83

3 17 0.025 1.4e+02 2.6 0.1 16 43 66 94 64 103 0.76

4 17 0.0064 34 4.5 0.4 23 45 102 124 94 132 0.84

5 17 0.16 8.5e+02 0.0 0.0 22 43 129 150 124 154 0.85

6 17 0.0015 8 6.5 0.2 21 45 156 180 148 188 0.81

7 17 0.059 3.1e+02 1.4 0.1 21 43 184 206 179 211 0.84

8 17 0.0017 9.1 6.3 0.2 12 44 212 244 204 252 0.84

9 17 0.021 1.1e+02 2.8 0.0 21 43 249 271 244 280 0.87

10 17 0.046 2.5e+02 1.7 0.0 19 44 284 309 274 318 0.83

11 17 0.00068 3.6 7.6 0.0 21 43 342 364 333 369 0.87

12 17 0.00043 2.3 8.3 0.1 21 46 370 395 365 402 0.85

13 17 0.19 1e+03 -0.2 0.0 21 43 398 420 394 425 0.78

14 17 0.013 70 3.5 0.0 21 45 426 450 418 458 0.84

15 17 0.002 11 6.1 0.0 21 44 482 505 474 509 0.90

16 17 0.041 2.2e+02 1.9 0.1 21 44 510 533 505 537 0.87

17 17 0.018 96 3.1 0.1 21 43 538 560 530 566 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.49	2.6e+03	-1.5	0.0	22	43	17	38	12	43	0.84
2	17	0.0012	6.4	6.8	0.0	21	45	44	68	34	77	0.83
3	17	0.025	1.4e+02	2.6	0.1	16	43	66	94	64	103	0.76
4	17	0.0064	34	4.5	0.4	23	45	102	124	94	132	0.84
5	17	0.16	8.5e+02	0.0	0.0	22	43	129	150	124	154	0.85
6	17	0.0015	8	6.5	0.2	21	45	156	180	148	188	0.81
7	17	0.059	3.1e+02	1.4	0.1	21	43	184	206	179	211	0.84
8	17	0.0017	9.1	6.3	0.2	12	44	212	244	204	252	0.84
9	17	0.021	1.1e+02	2.8	0.0	21	43	249	271	244	280	0.87
10	17	0.046	2.5e+02	1.7	0.0	19	44	284	309	274	318	0.83
11	17	0.00068	3.6	7.6	0.0	21	43	342	364	333	369	0.87
12	17	0.00043	2.3	8.3	0.1	21	46	370	395	365	402	0.85
13	17	0.19	1e+03	-0.2	0.0	21	43	398	420	394	425	0.78
14	17	0.013	70	3.5	0.0	21	45	426	450	418	458	0.84
15	17	0.002	11	6.1	0.0	21	44	482	505	474	509	0.90
16	17	0.041	2.2e+02	1.9	0.1	21	44	510	533	505	537	0.87
17	17	0.018	96	3.1	0.1	21	43	538	560	530	566	0.85

Sequence Information

Coding Sequence: ATGTCTAACACATCAAATTTAACTGCGGATAAAAGGACACATAATGGAGAAAAATCACTTAACTGTAATCTCTGTGATAAAAGCTTTTCTACATCATCAAATTTAACAAATCATACAAGGACACATACCGGAGAAAAACCGTATAAGTGTGAAATCTGTGATCAAGCTTTTTCTCAGAAAACAAATTTAAAAACTCATTCAAGGACACATACTGGAGAAAAACCATATATATGTGATATCTGTGACCAATCTTTTTCTAAATCAAGTATTTTAAAAATCCATAAAAGGACACATACGGGTGTAAAGCCATATATATGTGATATTTGTAATCAAGCTTTTTCTCAAGCACATCATTTAACAAGACATACAAGGACACACACCGGGAATAAGCCTTATAAATGTGATATTTGTGATAAGGGGTATTCTACATCAATAGATCTTACAAGACATAAAAGGACACATAGTGGAGAAAAGCCGTACAAATGTGGTATCTGCGATCAAGCTTTTTCTCAAGCATATCATTTAACAAGACATACAAGGACGCATACCGGCGAAAAGCCATATAAATGTGAAATCTGCAATACAAGGTTTTCAGGAGCATCAGATTTAAAAAAACATACGAGGACACATACCAGAGAACAACCTTATAAAACACATACGGGAGAAAAGCCGTATAAATGTGATGTCTGTCATCAAGCTTTTTCTCAAGCACATCATTTAAAAGGGCATACAAGGACACACACTGGAGAAAAACCGTTTAAATGTGGTATCTGTGATCAAGCTTTTTCACAAGCACATAGTTTAAACACCCATAAAAGAACACATACCAGTATTGAGCCATATAAGACACATAATGGAGAAAAGCCGCATAACTGTAATCTCTGTGATAAAAGCTTTTCTACATCATCAGATTTAACAAAACATACAAGAACACATACCGGAGAAAAGCCGTATAAGTGTGATACCTGTGATCTAGCTTTTTCTCTGAAAACAAATTTAAAAAATCATAAAAGGACACATACTGGTGAAAAACCGTATGGATGTGATATTTGTGATCAAGCTTTTTCTCAAGCACATAATTTAAAAACCCATAAAAGGACACATACCGGTGAAATTCCGTATAAATGTGATATTTGTGGTCGTGCCTTTTCTCAAGCATATAATTTAACAAGGCATATAAGAACACATACCGGTGAAAAACCTTATAAATGCGATATCTGTGGTAAGGGATTTTCTACATCATCAGATTTAACAATGCATACAAGGACACATACCGGGGAAAAACCGTATAAGTGTGATATATGTGATAAGGGGTTTTCTACATCATTTGATTTAACAAGGCATACAAGGACACATACCGGTATAAAGCCGTACAAATGTGATTTATGTGATCAAGCTTTTTCTCTAGCACATCATTTAACAGGGCATATAAGGACACACACCGGAGAAAAACCATTTAAATGCGGTATCTGTGATCAAGCTTTTTCTCAGAAAACAAATTTGACAAAGCATACAAGGACACATACCGGCGAAAGACCTTACATATGCCAAATCTGTGATAAGGGGTATTCTACATCATTAGATTTAACAAGGCATACTAGGACACATACGGGAGAAAAACCGTATAAATGTGATATATGTGATCAAGCTTTTTCTCAAGCACATAGTTTAAACACTCATAAAAGAACACATACTAGTATTGAGCCGTATAAATATGTTATCTGTGATTTAGCGCTTTCTAATGCCTCAAATTAA
Protein Sequence: MSNTSNLTADKRTHNGEKSLNCNLCDKSFSTSSNLTNHTRTHTGEKPYKCEICDQAFSQKTNLKTHSRTHTGEKPYICDICDQSFSKSSILKIHKRTHTGVKPYICDICNQAFSQAHHLTRHTRTHTGNKPYKCDICDKGYSTSIDLTRHKRTHSGEKPYKCGICDQAFSQAYHLTRHTRTHTGEKPYKCEICNTRFSGASDLKKHTRTHTREQPYKTHTGEKPYKCDVCHQAFSQAHHLKGHTRTHTGEKPFKCGICDQAFSQAHSLNTHKRTHTSIEPYKTHNGEKPHNCNLCDKSFSTSSDLTKHTRTHTGEKPYKCDTCDLAFSLKTNLKNHKRTHTGEKPYGCDICDQAFSQAHNLKTHKRTHTGEIPYKCDICGRAFSQAYNLTRHIRTHTGEKPYKCDICGKGFSTSSDLTMHTRTHTGEKPYKCDICDKGFSTSFDLTRHTRTHTGIKPYKCDLCDQAFSLAHHLTGHIRTHTGEKPFKCGICDQAFSQKTNLTKHTRTHTGERPYICQICDKGYSTSLDLTRHTRTHTGEKPYKCDICDQAFSQAHSLNTHKRTHTSIEPYKYVICDLALSNASN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01350301;
90% Identity: iTF_01350301;
80% Identity: iTF_01350301;