Ster003053.1
Basic Information
- Insect
- Sisyra terminalis
- Gene Symbol
- -
- Assembly
- GCA_958496175.1
- Location
- OY292274.1:56195172-56196943[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00017 0.39 11.1 0.4 19 54 171 206 158 206 0.85 2 10 0.33 7.6e+02 0.5 0.1 23 32 203 212 197 224 0.67 3 10 1.8 4.2e+03 -1.8 0.0 26 44 250 268 248 271 0.84 4 10 1.9 4.2e+03 -1.9 0.0 27 52 281 306 279 308 0.81 5 10 0.026 60 4.1 0.0 23 46 333 356 326 362 0.86 6 10 0.04 90 3.5 0.0 21 48 359 385 355 388 0.87 7 10 0.41 9.4e+02 0.2 0.1 23 46 417 440 411 446 0.81 8 10 0.097 2.2e+02 2.2 0.1 21 43 443 465 435 469 0.84 9 10 0.0025 5.6 7.4 0.0 21 52 471 502 466 504 0.87 10 10 0.0019 4.4 7.7 0.0 21 44 499 522 496 528 0.90
Sequence Information
- Coding Sequence
- atggaGGAATTAAACGAAGCATCTTTAGTTAAAACTTGCCGCGCTTGTATGGCAGAAAATGTGGAAATGCGTTCAATTTTCGTTTCGGATGAAAACGTTGATACAAACATACATCTGTCAGAAATGATAATGGCGTATGCTGCTGTTCAGatTACCCTTGGCGATGGCTTACCCGAGCAAATTTGCTTGGATTGTGCAGCCCAAGTAACTAAAACTTACATGTTCAAATTACAATGTGAAAAGTCTGACGCAGCCTTACGCGAAAGATTGGgattggaaaaattgattttaccaAAAGAAGAGATTTTACAAACGTTAAACACAACAGCCGTTTTTGATTCTGAAGAAATCGTCATCAAACCAGAGATCAAAGAATTGAATGAAGATGAAGAGGAATACGAATGTGATACTCATGCGGAAATCATCGAATCAGAAGatgaagatattaaaaatgtctTAGAAAACAATCTAAATAAACTGCCAGACCAATCAGAATTGGGAAGTACAatagttcaaaataaaaaatctcaCAAATGTCCAAAATGTAAAAAAGTGTTTAATCGTGGAAGTCATTTAAATCGTCATTTACGAGTGCATAGCAATGCAAAGCCATTCGTTTGTCCTGTATGTAGTAAAGGATTTACTCGTAATGATTTATTACTTAGACATAAAATAGTACACACACCTCAAATACAAATTAGTAACCAAGAAGGTGATGCCATAAGTGAAAATcttgatataaaattaaattgtacaaTCTGTGAAAAAGTATTTAACAAAAAAGAGAGTCTAGCATCCCATATGAGAACGCATACTGGTGTTTTACGAAAAGTTTTGTCTTGTGAAGTATGCACGAAAAAGTTTAACAAACCAAGTCAATTAACGCGCCATACCAAAATCCATGCATCAGTAAAACCGCACATTTGTCAATTATGTGGAAAAGGTTTTGCCCGTGGTGAACAACTCATTAATCATATGAATGTACATTCCGGAGTCAAGCCACATGTTtgtaaaatatgtgaaaaaggCTTCAATCAAATTAGTAATCTTAAAGATCATATGCGAACTCATAACGGTGAAAAACCATTTTTGTGCTCGACCTGTGGAAAAGGTTTCAATCAACTGGGCAATTTAAGGCAGCATACTGTAAGACACAGTGGAATTAAAGCACATTTGTGCAATATTTGTGGTAACGGATTCGCTAGCAAAGGAGAACTAGGTGCCCATCTGCGAAAACACACAGGCGCTAGACCGTACGTTTGTAACATCTGTAATCATGGGTTTACTACTTCTAGTTCACTAACAAAGCATAAAAGAATTCACAGTGGTGAAAAACCATATGAATGTGACGTATGCCATATGAAGTTTTCTCGAAGTGGGATTTTGGCTCGTCATAAAAGAACACATACTGGAGAGAAGCCGTATGTTTGTACTTTTTGTTCCAAAGCCTTTTCCCAAAGTAATGATTTGAGCTCCCATCTGCGGATTCACACCGGTGAGAAACCCTACATTTGCGATGTATGTGGTCAAGCATTTAGACAAAGCTCTGCGTTAAAAACTCATAAAAAAGTACATATGGATCGAACTAATGTCACTAAtgttttggaaaatattgatCGTAATACTCTTATTGAAAATCGTGTAGCCACTTTAGCTATCGTAAAGTCTGCTATACTCGGTAGCATGCAATAG
- Protein Sequence
- MEELNEASLVKTCRACMAENVEMRSIFVSDENVDTNIHLSEMIMAYAAVQITLGDGLPEQICLDCAAQVTKTYMFKLQCEKSDAALRERLGLEKLILPKEEILQTLNTTAVFDSEEIVIKPEIKELNEDEEEYECDTHAEIIESEDEDIKNVLENNLNKLPDQSELGSTIVQNKKSHKCPKCKKVFNRGSHLNRHLRVHSNAKPFVCPVCSKGFTRNDLLLRHKIVHTPQIQISNQEGDAISENLDIKLNCTICEKVFNKKESLASHMRTHTGVLRKVLSCEVCTKKFNKPSQLTRHTKIHASVKPHICQLCGKGFARGEQLINHMNVHSGVKPHVCKICEKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTVRHSGIKAHLCNICGNGFASKGELGAHLRKHTGARPYVCNICNHGFTTSSSLTKHKRIHSGEKPYECDVCHMKFSRSGILARHKRTHTGEKPYVCTFCSKAFSQSNDLSSHLRIHTGEKPYICDVCGQAFRQSSALKTHKKVHMDRTNVTNVLENIDRNTLIENRVATLAIVKSAILGSMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01349045;
- 90% Identity
- iTF_01349045;
- 80% Identity
- iTF_01349834;