Ster001849.1
Basic Information
- Insect
- Sisyra terminalis
- Gene Symbol
- zfh1_11
- Assembly
- GCA_958496175.1
- Location
- OY292274.1:33258355-33259236[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0001 0.23 11.8 0.2 8 48 105 146 99 149 0.87 2 4 0.16 3.6e+02 1.6 0.1 16 40 171 195 154 204 0.80 3 4 0.0039 8.9 6.7 0.2 18 43 229 254 219 260 0.90 4 4 8.2e-05 0.19 12.1 0.2 21 49 260 288 255 292 0.90
Sequence Information
- Coding Sequence
- ATGCATGTCGCAACACATAACATTAATCAATCTGTGCAAAATGAATTTAATCAACTTGAAGATTCGGAttcgaattcaatgaaatatgTTGAAAACGACAATAGCAATTCAACtacttattctaaaaaaagaGACGAAGATTCCTCCCAGAAAATAGATACCAATGATAAAGAAGTACAAAACGTTCGTACATCGTTAAAAACGAACAAGTTAATTTGTCGAAATAGTCTAAATAAGGATGAAATCGAACAAGCGAGAATAACGATTGATAAACGAACATATTATCGATGTAAAGAGTGTGGAAAAAATCTGCACAGTCCTTACACTTATAAGTGGCATTGTCGAATTCACACAGGCGAACGTCCCTATGTCTGTGATTTATGTGGTAAACAATTTCGTGTGTCACAAGGTTTAGTGCGACATTTACGTGAAACACATGCAGGAATCAAAAACTTCCCTTGTGATTTGTGCGGCCGTATGTTTGCTACTAGGCGAAATGTTGAAGAACACAGAAGAATACATACCAATGAACGACCGTATGTGTGCGACTTGTGTGGAAAAGCATTTAAACAAAAAGCGTCGTTATTTGTGCACAACCGATCTCATACCGATAGTTTTCCCCATAAATGTAGTTATTGCGGTCAAGGATTTCGAACTAAACCTCCCTTGTTGGTACACGTTACACGACACACAGGAGAAAAACCATTCCCATGTGAAATTTGCGGTAGATGTTTTCGAATTAAATATGAACTTAAAAGACATCGTTTAATACATTCTGATGAAAAACCGTTTAGTTGTACAGAATGTGGCACTTCATTTAGACAAAAACGATATTTACGTAATCACAATAAAATGAATCATAACAGTCGTATTTCAATTTAA
- Protein Sequence
- MHVATHNINQSVQNEFNQLEDSDSNSMKYVENDNSNSTTYSKKRDEDSSQKIDTNDKEVQNVRTSLKTNKLICRNSLNKDEIEQARITIDKRTYYRCKECGKNLHSPYTYKWHCRIHTGERPYVCDLCGKQFRVSQGLVRHLRETHAGIKNFPCDLCGRMFATRRNVEEHRRIHTNERPYVCDLCGKAFKQKASLFVHNRSHTDSFPHKCSYCGQGFRTKPPLLVHVTRHTGEKPFPCEICGRCFRIKYELKRHRLIHSDEKPFSCTECGTSFRQKRYLRNHNKMNHNSRISI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01349915;
- 90% Identity
- iTF_01349915;
- 80% Identity
- iTF_01349915;