Ster017750.1
Basic Information
- Insect
- Sisyra terminalis
- Gene Symbol
- zfh1_10
- Assembly
- GCA_958496175.1
- Location
- OY292279.1:43045475-43046597[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.3 7.5e+03 -2.7 0.0 34 40 52 58 50 67 0.70 2 3 1.3e-09 3.1e-06 27.4 0.1 21 51 221 251 213 255 0.86 3 3 0.44 1e+03 0.1 0.1 23 48 252 277 249 279 0.82
Sequence Information
- Coding Sequence
- ATGTCGAGAAAAGATCGTCAGATGGACGAATGTTTGATTTGTTCCGAGGAATACAAAATAATGATTCCATTGCAACAATGTCTAAGCGAATTTGCACACTTATCTGTCGCCCAAGTGTTGCAGCACATGaactttttaaatATTTCAGATGCTATAAACCAGACTCGAAATTTATGCCTTATGTGTGTggcaaaaattcaatattgttacgaatttaaaataaaatgtggtCACGTTGAAAGAGTATTGAAAAGTACAACCGACAATTTACGGGATGAGGCTGTTGTATCTCCATTGTGTAAAATCAAATCCGAAGACTTTGACGTAAACATTAAAGATGAACCTTACCAAGAAACAATCAACGAAAATTATCATTGCCAACAATTAAAAGTAGAAGAAACTCCAGAGGATTTGTATTCGGCAGATTCGATGGAATCTGCACAAAAACCATCGACTAGCGATTATTTTGTTTCCAATTCTGAGATTGAATTTCACGGCAAAATGTTTACCACCCAAGAAAGTTCTAATCTCCAATCCCGCAAAAGCAAGAACATGTGTCACAAAGTCAGAAAGAAAGAGGAAAAGAATGTAATGTGTTTGGTTtgtgagaaaaaattttatcgaaagCATCATTTAATTGACCATTCGAGAGTACATACGGGCGAAAAACCGTACACTTGCGATATTTgttataaatcattttccCAGTCGTGTAACTTAAAAAAGCACATGAAAGTAAAGCACAGTGACAAAAAGCCTCACGTGTGTGACGTGTGTAATAAATCATTTAGTTATCGTTGCTACTTAACTCGTCATATGTTAATTTATCACAATAAAGAGAAACATAAAAGGTGA
- Protein Sequence
- MSRKDRQMDECLICSEEYKIMIPLQQCLSEFAHLSVAQVLQHMNFLNISDAINQTRNLCLMCVAKIQYCYEFKIKCGHVERVLKSTTDNLRDEAVVSPLCKIKSEDFDVNIKDEPYQETINENYHCQQLKVEETPEDLYSADSMESAQKPSTSDYFVSNSEIEFHGKMFTTQESSNLQSRKSKNMCHKVRKKEEKNVMCLVCEKKFYRKHHLIDHSRVHTGEKPYTCDICYKSFSQSCNLKKHMKVKHSDKKPHVCDVCNKSFSYRCYLTRHMLIYHNKEKHKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01350058;
- 90% Identity
- iTF_01350058;
- 80% Identity
- iTF_01350058;