Ster017817.1
Basic Information
- Insect
- Sisyra terminalis
- Gene Symbol
- -
- Assembly
- GCA_958496175.1
- Location
- OY292279.1:44104771-44106830[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 4 9.2e+03 -2.9 0.9 26 40 51 65 48 69 0.74 2 9 0.00024 0.54 10.6 0.1 22 52 186 216 181 218 0.84 3 9 0.0018 4 7.8 0.0 21 52 213 244 209 246 0.86 4 9 0.07 1.6e+02 2.7 0.1 21 52 241 272 236 274 0.78 5 9 0.00064 1.5 9.2 0.0 21 44 297 320 283 328 0.86 6 9 0.0055 13 6.2 0.0 21 44 325 348 322 358 0.88 7 9 1.2 2.8e+03 -1.3 0.0 21 40 353 372 351 380 0.76 8 9 0.091 2.1e+02 2.3 0.0 21 43 381 403 376 407 0.91 9 9 0.0048 11 6.4 0.2 21 44 409 432 404 438 0.88
Sequence Information
- Coding Sequence
- ATGGAGACATGTTTAATTTGCTCGGATAAATACAAAACGATGGTTCCTCTGGAACAAATTTTGAGCGAATGTGAAGAATTATCGGTGGCACAAGCATTGCACTATTTACATTTCCTTACGatttccGAGATCAAAAACTTTCACCGGTCCGTGTGCTTTATTTGCGTTGCAAAAGTGCAGTCTTGTTATGATTTTAAAAGGATATGCAACCGAATTGAAAGTGCAATGGAAAGCGTTTCCGACAAAGCTAATTTCGAGCCAATTTTACTATCGAGAAATgatataaagaaagaaaaacattgGGATAATGATCTAGAAGGAAACGATGATAGTTGTCAACGATTATATGTTGAAGAAATTTACGAAAATCACgacgaaaaaaacataaaaattgtccAAGATACATCGGTTAAAACGGAGGCTGTAATACAAGTGCCAATTAATGATTGCAATCAACGTGAAATTGATATTGATGAGGGCATTTTCGAAACGAAAAAAGgaaaTCCCAATCAATCGGTAGCAGTTGCACTTAATAATATGGaacaaaattcaaaagaaaaagtcTATTTTTGTCCAACTTGTTATAAAAGTTTTCGTCTACCGAATCATTTACGTGAACATTTACGAGTGCATACCGGAGAGAAACCTtttgtttgtgatgtttgtaataaatcattttccCAATCTGGTAATTTAGCAACGCATAAAACGATTCACACGGGTGAAAAACCACACGTTTGTGATATTTGtaATAAATCGTTTAACCGAGCCAGCACTTTATTGCAACATAAATTCACGCATTCCGGTGCTAAGCCGCACGTAtgcgatgtttgtaATAAATCTTTTGTACGTCCCAGTAGTTTATATCAGCACAAATTAACACATTCGGGAGAGAAACCTTATGCGTGCGACATTTGTGataaagcATTTCGACAGCCTGGTAATTTAACTACGCATAAATTGATTCATACCAATGAAAAACCGTATaattgtgatgtttgtaGTAAAACATTTCGATTGTCCAGTAATTTGGCGGCACATAAGTTAATCCATAGTGGTGAAAGACCTtttgtttgtgatgtttgtgataaatcatttacgCAAAAAGCGCCTTTAATGGCCCATAAAATGATACATACCGGTGAAAGGCCGTACGTTtgcgatgtttgtaataaatcatttacgCATTCGAGTAGTTTAGGTCGACATAAAATAACCCACACGGATGAAAGACCTtatgtttgtaatttttgtcataaagCATTTACGCAGTCGTGTAATTTGTCAACGCATAAGATGAAAATGCACAGCCATAATGTATAA
- Protein Sequence
- METCLICSDKYKTMVPLEQILSECEELSVAQALHYLHFLTISEIKNFHRSVCFICVAKVQSCYDFKRICNRIESAMESVSDKANFEPILLSRNDIKKEKHWDNDLEGNDDSCQRLYVEEIYENHDEKNIKIVQDTSVKTEAVIQVPINDCNQREIDIDEGIFETKKGNPNQSVAVALNNMEQNSKEKVYFCPTCYKSFRLPNHLREHLRVHTGEKPFVCDVCNKSFSQSGNLATHKTIHTGEKPHVCDICNKSFNRASTLLQHKFTHSGAKPHVCDVCNKSFVRPSSLYQHKLTHSGEKPYACDICDKAFRQPGNLTTHKLIHTNEKPYNCDVCSKTFRLSSNLAAHKLIHSGERPFVCDVCDKSFTQKAPLMAHKMIHTGERPYVCDVCNKSFTHSSSLGRHKITHTDERPYVCNFCHKAFTQSCNLSTHKMKMHSHNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01349854;
- 90% Identity
- iTF_01349854;
- 80% Identity
- iTF_01349854;