Ster004592.1
Basic Information
- Insect
- Sisyra terminalis
- Gene Symbol
- -
- Assembly
- GCA_958496175.1
- Location
- OY292275.1:16205109-16206760[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 4.9e-06 0.011 16.0 0.1 13 51 171 209 167 211 0.86 2 8 0.0089 20 5.6 0.1 21 45 235 259 226 266 0.87 3 8 0.029 66 3.9 0.1 21 52 319 350 298 352 0.84 4 8 0.036 82 3.6 0.2 23 44 349 370 343 378 0.88 5 8 0.55 1.3e+03 -0.2 0.1 21 44 375 398 370 408 0.73 6 8 0.52 1.2e+03 -0.1 0.1 22 44 432 454 425 457 0.86 7 8 0.0022 5 7.5 0.1 21 48 459 486 451 490 0.84 8 8 0.0017 3.9 7.9 0.0 13 51 479 517 474 520 0.89
Sequence Information
- Coding Sequence
- atGGAACGTGAAGCCAATCCAATGTGTCGAATATGTTTGAGCACAAGCGGAGAATTCTTCGACATCTACGAATTTTCTGCACCAATTATGGAGTGTGCTCCCATTAATatTACTCCTGGAGATGGTTTGCCTAGTTTTATTTGTTCAGCATGTTTGGAAAAGTTGCAAACAGCTCAACAATTTCGGGTTTTATGCGTTTATTCTGATATTACATTACGAAATCAATTTACTATTACCATTGACGATGGAAATTCCTCACAAACACAAACCTTAACGGCAGTCACTACCCTAAACACAAACGGTTTAGAAACAACTCAATTACAGATCGAATCCAGTTCCGTGAAAAATGAACTAACCCGCGATGATCCCATATTTGAGTTTCTCAATGTTCAAGTTATTAGAAATGAACCAGCAACAAAATCAACTTCAATTCAGAAAAACACAAATACCACACCGGAAAGCATTGAAAATAACGATACAAAGGAAACTAGTTCTGGCGAAAATGACGCTGAAGAATTACAAAATAGATCGGTTGAGGAAAAGAAGTATGAATGCTCTTTATGCGATAAAATATTTCGCCAGTCTTCAGATTTAAAACGCCATATTAGAGTTCATACTGGTGAAAAGCCATACCATTGTGACAATTGCGGGAAAGCCTTTTCCCAAGAATACGATTTAACGAAACACAAGCGAATACATACTGGAGAGAAACCACATAATTGTGATGTTTGCGACAAACGTTTCACACAACTATCGAATTTattaaagcatttaaaaacTCATTGCAACTGTAAATCGTACAGTTGTGATATATGTAACAAAGAATTTAAAACACAATATAGTTTAAACAATCATAAAATGCAGCACACCGGCTTATTCCCATACAAATGTCCTAAATGTGATAAAGGATTTAGGCATAAAGTTCCACTAGAAGCTCACATGCGGATGCACACAGGAGAAAAACCTTATTCTTGTGATATTTGCGGACGGAATTTTCGCAATTTTTATAACATGACCGCACATAAACGAATTCATACAGGAACGAAACCGCATATGTGTGAAATatgtcacaaaaaattcaaccaaaaaccAGATTTGCGAGCTCATCAACGAGTACACACCGGAGAACGTCCTTACGAGTGTGATATATGCAAAAAACGACTTACATCTAGAGcaattttaacaaaacataTGCGAACGCACACGGGAGAGAAACCTTTTATTTGTTCTGAATGTAACAGACCTTTTAGTGATCGTAGCAATTTGATTACACATTTTCGAATACATTCAGGCAACAAACCCTATGTGTGTACTGTTtgcaacaaaaaattcaataccTCCCACAGTCTCACGAAACATTGTCGTACACATACTGGGGAAAAGCCGTATACGTGCGATATTTGTAATATGTCGTTTTTGGATGGCAGCAATTTAAATAAGCATAAAAAAAGAACACATTCCATTATTCCGTTGATGTGTCAAGTTTGTTTTCAAAAGTTTTGGGACGAACGGAGTCTAGTTAAGCATATTAACACTATGCATAAAGAGGAGCCGACTGGGACAGTTAAAGAAATATCTAGTctataa
- Protein Sequence
- MEREANPMCRICLSTSGEFFDIYEFSAPIMECAPINITPGDGLPSFICSACLEKLQTAQQFRVLCVYSDITLRNQFTITIDDGNSSQTQTLTAVTTLNTNGLETTQLQIESSSVKNELTRDDPIFEFLNVQVIRNEPATKSTSIQKNTNTTPESIENNDTKETSSGENDAEELQNRSVEEKKYECSLCDKIFRQSSDLKRHIRVHTGEKPYHCDNCGKAFSQEYDLTKHKRIHTGEKPHNCDVCDKRFTQLSNLLKHLKTHCNCKSYSCDICNKEFKTQYSLNNHKMQHTGLFPYKCPKCDKGFRHKVPLEAHMRMHTGEKPYSCDICGRNFRNFYNMTAHKRIHTGTKPHMCEICHKKFNQKPDLRAHQRVHTGERPYECDICKKRLTSRAILTKHMRTHTGEKPFICSECNRPFSDRSNLITHFRIHSGNKPYVCTVCNKKFNTSHSLTKHCRTHTGEKPYTCDICNMSFLDGSNLNKHKKRTHSIIPLMCQVCFQKFWDERSLVKHINTMHKEEPTGTVKEISSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01349836;
- 90% Identity
- iTF_01349836;
- 80% Identity
- iTF_01349836;