Ster017879.1
Basic Information
- Insect
- Sisyra terminalis
- Gene Symbol
- -
- Assembly
- GCA_958496175.1
- Location
- OY292279.1:44746642-44748901[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0009 2.1 8.8 0.0 21 52 169 200 166 202 0.85 2 8 0.97 2.2e+03 -1.0 0.0 22 43 198 219 195 223 0.80 3 8 0.00016 0.37 11.1 0.1 21 44 225 248 220 252 0.91 4 8 0.0064 14 6.0 0.1 21 43 253 275 249 280 0.90 5 8 0.01 23 5.4 0.1 21 52 281 312 279 315 0.85 6 8 1.6 3.7e+03 -1.7 0.0 23 43 311 331 308 336 0.83 7 8 0.00043 0.97 9.8 0.1 21 54 337 370 331 370 0.93 8 8 0.12 2.7e+02 2.0 0.0 21 46 393 418 386 426 0.83
Sequence Information
- Coding Sequence
- atgttgaatttaagTCACATCCACAAGTGTTTGGTGTGTTCGGAAGACCAAAACGTCATGATTTCATTGCACCAACCATTGAGGGACTGTGATGATTTGACAATAGGTCAAATATTGcaaaacttaaatttcttaACTATTGCAGATATTGCAGAATTGCACCGGACCATTATATGTTCCGTGTGTACAGCAAAGCTGCAGTCCTGTTACAAATTTAAGTTGCAATGGAGTTGCCATGGCAACTCCTTGGACACCATCACCAACGGTTCACCAGGTACCACGTCGAAAGATCCACTTTTGTCGCCGTCACCACTACTGCGGACGATTTTATCCGACGAAAATTCACATTTTATCGACCAATCGCAAGAGGATAGTGGAAACGACATAAATATCGATGATATAGTTCCACGAACCGACATTTTGCCGATtggaaccaattttcatgaaaatgttGCCATTACTAATAAAGAACATGAAATGTTGGGCAATTCTTTGATCGAAACCAGCAAAAGACCTTTTGCTTGTGATGTTTGCAATAAATCCTTTACACAATCCAGTAATCTATTCAAGCATAAAATGATACACACGGGAAAGAAACCGCATGTGTGCGATGTTTGTCataaatcatttattgAATCGCATGCTTTAACCGTTCACAAAATGATTCATACGGGTGAAAGACCATATGCGTGTGATGTTTGTCATAAAACATTTACGCAATCGTATAATTTAGTTAGACACAAAATGATACATTCGGGTGAAAGACCACATGTGTGcaatgtttgtaATAAATCATTTACGCAAGCCAGTAATTTAGCCAAACATAAACTCATTCATTCGGGTGAAAGACCGTTTgcgtgtgatgtttgtaATAAATCGTTTCATTCGTCCACCAATTTGTATCAACATAAAATGATACATACTGGCACAAAACCGTACGGTTGTGATCTTTGTGaTAAATCATTCACGCAATCGGGTAGTTTGGCCGTACATAAGCTAAATCATTCCGGCGAGAAACCTTTTtgttgtgatgtttgtaATAAATCATTCAATCGTTCGGGCAATTTAATTAAACATGCACTATTGCACACCGATGCCAAGCCACATGTTTGTGATATTTGTAATAAATCGTATAGTACCGCGAGTAATTTAGTTCAACATAAATTGATTCACTCCAACGAAAAACCATtcgtgtgtgatgtttgtaATAAAGCATTTTCGCAGCCAGGTTCTCTAggcaaacataaaaaaattcactTGGGAAAAAGGCCGCACGTTTGTGGTGTTTGTAGTGAGTAA
- Protein Sequence
- MLNLSHIHKCLVCSEDQNVMISLHQPLRDCDDLTIGQILQNLNFLTIADIAELHRTIICSVCTAKLQSCYKFKLQWSCHGNSLDTITNGSPGTTSKDPLLSPSPLLRTILSDENSHFIDQSQEDSGNDINIDDIVPRTDILPIGTNFHENVAITNKEHEMLGNSLIETSKRPFACDVCNKSFTQSSNLFKHKMIHTGKKPHVCDVCHKSFIESHALTVHKMIHTGERPYACDVCHKTFTQSYNLVRHKMIHSGERPHVCNVCNKSFTQASNLAKHKLIHSGERPFACDVCNKSFHSSTNLYQHKMIHTGTKPYGCDLCDKSFTQSGSLAVHKLNHSGEKPFCCDVCNKSFNRSGNLIKHALLHTDAKPHVCDICNKSYSTASNLVQHKLIHSNEKPFVCDVCNKAFSQPGSLGKHKKIHLGKRPHVCGVCSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01349874;
- 90% Identity
- iTF_01349874;
- 80% Identity
- iTF_01349874;