Ster014090.1
Basic Information
- Insect
- Sisyra terminalis
- Gene Symbol
- -
- Assembly
- GCA_958496175.1
- Location
- OY292278.1:24029639-24031405[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.003 6.8 7.1 1.3 26 47 200 221 192 227 0.86 2 7 0.00014 0.32 11.3 0.3 13 44 224 254 221 259 0.88 3 7 2.4e-05 0.055 13.8 0.0 21 46 259 284 255 287 0.90 4 7 3.2e-06 0.0073 16.6 0.2 21 48 287 314 283 318 0.93 5 7 0.76 1.7e+03 -0.6 0.0 13 33 325 345 316 359 0.77 6 7 0.016 36 4.8 0.0 21 47 416 442 414 449 0.86 7 7 0.51 1.2e+03 -0.0 0.1 21 46 444 469 440 477 0.81
Sequence Information
- Coding Sequence
- atgactgAAGAAATTATTATAGTCAATAATTATTCTAATATTTGTCGAGTTTGTTTGATGAATGGTGAATTACAGTCAGTATTTAATATAACGacttttaataacaataatatatcAATAGCTGATGCTATTATGGCATGCGCTTCTGTCCAAaTCAACATTGATGACCCCTTTCCTCTACAAATTTGTACCAATTgcttaaactatttaaatttagcTTACAAATTTCGTCAAAATTGCGAAAAAACAGATTTATTGTTGCGAAAAGGATTTGTCTTATCCAACGTTCAAAATGATATGTtggaaaatgattattttgaaGAATCAAGTGAGGAATTTCAAGTTAATACtgagaaaactatttttatatcgGATGAAActcaagaagaaaaaataatcgaagATGATATAGAAAATTTGAGGCTTCAAATGATCTGCCACGATGAAGTGATAGTTGAAGATGTTAATTCTAGTACATTACAGCCAGTAGATGAAGAAAGAAATCGGAAGACGGTGTCATGTACGAAATGCTTTAAAGATTTTacttcaaatcaaattaaaagtcatatgaaaattcataaaaatagaaaatgtttgGTTTGTAATATTTGTAAGCAGCAGTTTAGTTTAAGTTGTAATCTTCGTCGTCATATGATGTTACACACTGGTGAACAGCCAAAGACACATTCAGACAATAAGCCATACACTTGCCACATTTGTGGCCAACAATTTACCTTCAACTGTAATTTACGTCGTCATATAATGACCCATACAGGAGAAAGGCCGTACACATGTCCAGTTTGCAACAAAGGATTTATTCAATCCAATAATTTAGTGAATCATATGCGAATTCACACCGGCGAAAGTCCCTTCAAATGTGAAATTTGCCAGAGAAAGTTTCGTAAATCGTCTAATTTGCGGAGTCATGTCGAAACGAAACACGGAAATGGTAAGAATCgtaaaaaaaatggcaacaaAGGAAAAAATAGGACCGTATCGGATCGAGAGTATCTCTGCGAAATTTGTCGAAAAACATATTTATCTAAAGGAGCACTTAAAACTCACATGCTGATTCATGGAGATAAGAAGTTTCTTTGCAGCGAATGCGGAAAAGGTTTTGTCAGCAAACCTTTACTTCAATCCCACAGTAAAATTCATTCAGGAATAAAGCCATACCATTGCACAACATGTGATCGATATTTTTCCCATTACGTTTCCCTCAAGGCTCATACACTGATTCATACCGGCGAGAAACCTTTTGCTTGTAAAGTTTgtggaaaattattcaaacaacGACATCATTTAACATACCACCTAAGAACTCACAGTGGTGAGAAACCCTTCCTATGTTCTGTATGCAATAAACGTTTTTCATTGAATTGTAATTTGATTGTGCATATGCGATTACATTCTGGAGAAACGCCGTTTTTATGCTCCACATGTGGAAAAGGTTTCTATGATTCAAGCAGcatgaaaaaacattttcgtGGACATGCAAATGATAGTAAAATCTCGTCATCTGAAAAATGTAAACCACAAAAAGCGACACAAGCCAAAAAGATGTTAACCAAATCAGCTTTAAAAGAAGGGTTGAAAAAGCAAATTCAAAGAGATTGCCAAGATGTACTTGGAATTGATTATGATTGTACTGCATCAATTCTTCAGCTGCAAGAAAACCACAGCCAAATTTCCCTTTCGAGTAATGTTTAA
- Protein Sequence
- MTEEIIIVNNYSNICRVCLMNGELQSVFNITTFNNNNISIADAIMACASVQINIDDPFPLQICTNCLNYLNLAYKFRQNCEKTDLLLRKGFVLSNVQNDMLENDYFEESSEEFQVNTEKTIFISDETQEEKIIEDDIENLRLQMICHDEVIVEDVNSSTLQPVDEERNRKTVSCTKCFKDFTSNQIKSHMKIHKNRKCLVCNICKQQFSLSCNLRRHMMLHTGEQPKTHSDNKPYTCHICGQQFTFNCNLRRHIMTHTGERPYTCPVCNKGFIQSNNLVNHMRIHTGESPFKCEICQRKFRKSSNLRSHVETKHGNGKNRKKNGNKGKNRTVSDREYLCEICRKTYLSKGALKTHMLIHGDKKFLCSECGKGFVSKPLLQSHSKIHSGIKPYHCTTCDRYFSHYVSLKAHTLIHTGEKPFACKVCGKLFKQRHHLTYHLRTHSGEKPFLCSVCNKRFSLNCNLIVHMRLHSGETPFLCSTCGKGFYDSSSMKKHFRGHANDSKISSSEKCKPQKATQAKKMLTKSALKEGLKKQIQRDCQDVLGIDYDCTASILQLQENHSQISLSSNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01349862;
- 90% Identity
- iTF_01349862;
- 80% Identity
- iTF_01349862;