Ster012553.1
Basic Information
- Insect
- Sisyra terminalis
- Gene Symbol
- -
- Assembly
- GCA_958496175.1
- Location
- OY292277.1:45267991-45270202[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.4 3.6e+02 2.1 0.9 3 21 5 24 3 25 0.84 2 15 8 5.3e+02 1.6 0.2 2 20 31 49 30 51 0.86 3 15 2.6 1.7e+02 3.1 0.1 1 12 140 151 140 154 0.91 4 15 2.5 1.7e+02 3.2 6.2 1 21 292 312 292 313 0.94 5 15 1e-05 0.00066 20.2 2.6 1 23 320 342 320 342 0.98 6 15 2e-05 0.0014 19.2 1.5 1 23 360 382 360 382 0.95 7 15 0.18 12 6.8 0.1 1 23 414 435 414 435 0.84 8 15 8.9e-07 5.9e-05 23.5 3.6 1 23 441 463 441 463 0.98 9 15 0.00038 0.025 15.2 0.3 1 23 469 491 469 491 0.98 10 15 0.00034 0.022 15.4 1.4 1 23 500 522 500 522 0.98 11 15 8.1e-07 5.3e-05 23.6 4.2 1 23 528 550 528 550 0.98 12 15 0.0022 0.14 12.8 7.1 1 23 556 578 556 578 0.98 13 15 0.00012 0.0079 16.8 0.2 1 23 584 606 584 606 0.98 14 15 3.5e-05 0.0023 18.5 0.3 1 23 610 632 610 632 0.98 15 15 0.00018 0.012 16.2 0.1 1 23 640 663 640 663 0.96
Sequence Information
- Coding Sequence
- ATGATGTTGGTCTGCCCGTTATGTTGTGGCGAAAAATTCTCATGTGCCGAATCGCTAAAGTATCACTTACTTAGTATGACGGTGAATATATATTGTCCGTCTTGTAATAAGCTTTGCGATGGAATTCCGCAACTCACAGAACACTTAGATAAAGAATGTGACCAATTGCCACCAATTACAAATGGAATTTCAAACCCAAACCTAGAAATTATCAAGGACGAAGatcaagaaaaaagtaattCTTCTTGTGATAAATCGGTGGTTGCAATAGATGTTGATGAAGTTATGGATCAAATCGAACTAGTGGACGGAGCTGGGAACTTATTAGACTCTAATTCATTCCAAAGTGACACCACTGTTGTTCTTGACAACGATTCCATTGTTACCAATGAAAATGGAGAAATTCAAGAGGAAGTCTATTCATGTTCGAGTTGCGGAGTTAATTTTACTTCAATCATGGAACATATACAACAGTATCATGATGGTCAAGAAGTCGTTGTAGAAATGTCCGAAAATAATGAGCATGAAATCGGAAAAAGTGGATTAGTAGAACTTGGTgaacaaattgaagaaaaaacagGTGATGATATTACTGAAGATTCATCAGGTGAAAGTGGAGAAGAACCAGACGTAAAATATCCTCAACTTCTTAATACCTTGAAACAAGAAGAATGTGTAGATCGTGACGGGCGCGTTTACACGCGCAAAGTGGttcaaatcgaaaaattttgGATCGACGAAAAAGGGGaacaaaaaccaaatttaaatcGACGTCAGCCAATTTGTGAGCGTTATAATTTAGGAGATGATGGCGAATTAGTTGTTATTGATAAGAAAGATGAAATAAAAGATGATAAGAAAGTATTGCAAGTTTACACATGTAGTCGATGTCAATtacaattttctaaaataactCACTTTTATAAACATACGTGTAATATTGATCGACTCAGTGAGTTCCGATGTTCGCAATGTGATGTCAGTTTTAACAATTCTAAATCGTTATGTGCTCATATGAAGGCACATAAGATATTAAACCCTTTGGGTTCGGTGCCTTCAGCCTCGGCGTCTGCCCCTTTTCTATGCCGAAAATGTGATACGGTTTTCCCCACCAATAAATCGTTGCGACTGCACCAACGCATGCATGATCCGATTAAAACCAAGGAAATTGAAGCTCCTGTCGACTACGGAATTACAGGCCCGCCGGAAGATGTCGACGTTACTAAGCCTCGCGAAATGTTTATCTGTCCTGTGTGTACGAAAACTTACGATAAAGTCTACGAAGCAGTACACATGGCTACGCATAACGGTGAAGAAGATTTCCACTGCGATATTTGCAACCGGAAATTTTATACGaatgataatttgaaaatgCACATGCGAGTTCATACGGGAGGAAAACCTTTTTCTTGTACCTACTGTAAAAATTCGTTTGATACGGGCGAAGCCCTAACCGAGCACATGGAAGTGCACTCGAAAGATGCATTGATCGATCGTTACTCGTGCGGCTTTTGTGGGCGCAAGTTTGCTAGGCCGCACGAAAAAGTCAAGCATGAAAGAATTCACACTGGTGAGAAACCACACGAATGTGAGATTTGTGGTAAAACGTTCCGAGTAAGTTATTGTTTAACTTTACATATGCGAACGCATACGGGAGCTAGGCCTTACATTTGCAAGCACTGTGGTAAACGGTTTAAAGCCCACAGTGTATACAACCACCATTTATTGACTCATTCAGATGAGCGTAACTATAAATGTCCATTCTGTCCAAAAGCGTTCAAAACGGGAGTTCAACTTGCAGGACATAAAAACAGTCATACAAAACCCTTCAGCTGCACGGAATGTAATCGTCCGTTCGCTTCTTTATATGCGGTACGATCTCACATGGAAACCCACAAacgagaaaataatttaaagtttagcTGCTATCTTTGTGGGGCGTCCTACGCCCGGAATTTCGCTCTTCGCGACCACATTAGAGAAGTGCATCAAGCCACGCAAATCGTTGTCGCCAATGTCGGTGAAGATGGTAATATTATCATGCAAGAAAATGTAGAACTTGAGGGAATGGAAGACTTTAAGGCGACGACGTCAATTTTGCCTGATGTTGAAACTATACACGAAGTTCAAGCCCAAACTTCCGAAGAGGATTTATGA
- Protein Sequence
- MMLVCPLCCGEKFSCAESLKYHLLSMTVNIYCPSCNKLCDGIPQLTEHLDKECDQLPPITNGISNPNLEIIKDEDQEKSNSSCDKSVVAIDVDEVMDQIELVDGAGNLLDSNSFQSDTTVVLDNDSIVTNENGEIQEEVYSCSSCGVNFTSIMEHIQQYHDGQEVVVEMSENNEHEIGKSGLVELGEQIEEKTGDDITEDSSGESGEEPDVKYPQLLNTLKQEECVDRDGRVYTRKVVQIEKFWIDEKGEQKPNLNRRQPICERYNLGDDGELVVIDKKDEIKDDKKVLQVYTCSRCQLQFSKITHFYKHTCNIDRLSEFRCSQCDVSFNNSKSLCAHMKAHKILNPLGSVPSASASAPFLCRKCDTVFPTNKSLRLHQRMHDPIKTKEIEAPVDYGITGPPEDVDVTKPREMFICPVCTKTYDKVYEAVHMATHNGEEDFHCDICNRKFYTNDNLKMHMRVHTGGKPFSCTYCKNSFDTGEALTEHMEVHSKDALIDRYSCGFCGRKFARPHEKVKHERIHTGEKPHECEICGKTFRVSYCLTLHMRTHTGARPYICKHCGKRFKAHSVYNHHLLTHSDERNYKCPFCPKAFKTGVQLAGHKNSHTKPFSCTECNRPFASLYAVRSHMETHKRENNLKFSCYLCGASYARNFALRDHIREVHQATQIVVANVGEDGNIIMQENVELEGMEDFKATTSILPDVETIHEVQAQTSEEDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01349087;
- 90% Identity
- -
- 80% Identity
- -