Basic Information

Insect: Sisyra nigra
Gene Symbol: -
Assembly: GCA_958496155.1
Location: OY292316.1:48732674-48738145[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 4.4 3.6e+02 2.1 0.9 3 21 5 24 3 25 0.84

2 13 2.9 2.3e+02 2.8 0.2 1 12 137 148 137 151 0.91

3 13 7e-05 0.0057 17.3 6.1 1 23 318 340 318 340 0.98

4 13 1.5e-05 0.0013 19.3 1.4 1 23 358 380 358 380 0.96

5 13 0.13 11 6.9 0.2 1 23 412 433 412 433 0.85

6 13 7.1e-06 0.00058 20.4 5.8 1 23 439 461 439 461 0.98

7 13 0.00036 0.029 15.0 0.9 1 23 467 489 467 489 0.98

8 13 0.00028 0.023 15.4 1.4 1 23 498 520 498 520 0.98

9 13 6.7e-07 5.4e-05 23.6 4.2 1 23 526 548 526 548 0.98

10 13 0.0018 0.14 12.8 7.1 1 23 554 576 554 576 0.98

11 13 2.1e-05 0.0017 18.9 0.2 1 23 582 604 582 604 0.98

12 13 2.9e-05 0.0024 18.5 0.3 1 23 608 630 608 630 0.98

13 13 0.00015 0.012 16.2 0.1 1 23 638 661 638 661 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	4.4	3.6e+02	2.1	0.9	3	21	5	24	3	25	0.84
2	13	2.9	2.3e+02	2.8	0.2	1	12	137	148	137	151	0.91
3	13	7e-05	0.0057	17.3	6.1	1	23	318	340	318	340	0.98
4	13	1.5e-05	0.0013	19.3	1.4	1	23	358	380	358	380	0.96
5	13	0.13	11	6.9	0.2	1	23	412	433	412	433	0.85
6	13	7.1e-06	0.00058	20.4	5.8	1	23	439	461	439	461	0.98
7	13	0.00036	0.029	15.0	0.9	1	23	467	489	467	489	0.98
8	13	0.00028	0.023	15.4	1.4	1	23	498	520	498	520	0.98
9	13	6.7e-07	5.4e-05	23.6	4.2	1	23	526	548	526	548	0.98
10	13	0.0018	0.14	12.8	7.1	1	23	554	576	554	576	0.98
11	13	2.1e-05	0.0017	18.9	0.2	1	23	582	604	582	604	0.98
12	13	2.9e-05	0.0024	18.5	0.3	1	23	608	630	608	630	0.98
13	13	0.00015	0.012	16.2	0.1	1	23	638	661	638	661	0.96

Sequence Information

Coding Sequence: ATGATGTTGGTCTGTCCGCTATGTTGTGGCGAAAAATTCTCATGTGCCGAATCGTTAAAGTACCATCTACTCAGCATGACAGTTAACATTTACTGTCCCTCGTGCAATAAGTTGTGTGATGGAATTCCACAGCTCACCGAGCACCTGGATAAGGAGTGCCATCAACCGGTTTCCGGCAATGGCCTGGGTCTGACAGCGATCAAGGAAGAGGACGACACGTGTAAAAATGAGTCGTCCTGCGACAAGCCCCACATGGACGAGGAGACGACCATCGATCAAATCGAGTTGGACGACCCGACCGATGAAATCCTCGATCCAAATTCATTCCAAAGCGACACATCTGTGGTTCTCGATGGCGAGTCGTTAGTTGTCACGGGCCATGAAAACGGCGAGATCCAGGAAGAAGTTTTCTCGTGCTCGAGCTGTGGCGTTAATTTTACCTCAATTATGGAGCATATACAACAATACCATGACGGCCAAGAAGTTGTCGTTGAAATGTCTGAAAGTACTGTGGAGCAAATTTCCAAGCCGGAACAACTACTGGAACTGCAAGACAAACTTAATAAAGCCAACGACGAAAACACCGAGGACTCATCGATGGAAAGTGGCGAAGAACAAGATGCCAAATATCCCCAAGTGCTGAACACCTTAAAACAAGAGGAATGTGTCGATCGGGACGGTCGCGTATACACCCGTAAAGTGGTGCAGATcgaaaaattttggattgacgAAAAATCCGGCGAGGCCAAGCCCAGCACGAATCGACGTCAAGCGATTTGTGAACGTTACAATTTGGGCGCGGACGGCGAATTGGTCGCGATGGGAAAAGACGACGAGGCCAAAGACGACAAAAAAGTGTTGCAAGTGTACACATGCAGTCGATGCCAAATGCAATTTCAAAAGATCACCCATTTCTATAAGCACACGTGTAATATAAACCGAGCGAACGAATACCGTTGTGCGCATTGCGACGTTTGTTTCAACAATTCCAAGTCGTTATGTGCCCATATGAAAGCGCATAAAGTGATGAATCCACTCGCCCATGTCTCATCGGCCACGGCCTCCGCCCCCTTTTTGTGTACCAAATGTGACACGATTTTCCCGACTAATAAATCGTTACGGTTGCATCAACGAATGCATGATccgattaaaattaaagaaattgaaGCACCGGTCGACTATGGAATCACGGGGCCTCCAGACGTTTCCGATGTGAATAAACCACGCGAGATGTTCATATGTCCCGTATGTACGAAGACCTATGATAAAGTCTACGAAGCGGTGCATATGGAGACCCATAATGATGAAGAAGATTTCCACTGCGATATTTGCAATCGGAAATTTTATACGCACGATAATTTGAAGATGCACATGCGAGTGCATGCTGGCGGTAAACCGTTCTCTTGTACCTATTGTAAGCATGCGTTTGATACGGGCGAAGCCCTAAGTGAACATATGGAGACCCATTCGAAAGATACGCTTGTCGATCGATACTCGTGCGGATTTTGTGGTCGTAAATTTGCGAGGCCTCATGAAAAAGTGAAACACGAACGGATTCATACGGGTGAAAAGCCGCATGAGTGTGAGATTTGCGGTAAGACGTTCCGTGTGAGTTATTGTTTAACGTTGCACATGCGAACGCATACCGGAGCACGGCCGTACATTTGTAAACACTGCGGTAAACGTTTCAAAGCTCACAGTGTCTATAATCATCATTTATTGACTCACTCCGATGAAAGAAACTATAAGTGTCCGTATTGTCCGAAGGCTTTTAAGACAGGGGTGCAACTCGCGGGTCATAAAAATAGCCATACGAAACCTTTTAGTTGTACCGAGTGCAATCGGCCATTTGCCTCGCTGTATGCGGTACGATCCCATATGGAAACCCATAAACGGGAAAATAACCTCAAGTTTAGTTGTTATCTATGTGGAGCGTCGTATGCTCGAAATTTTGCACTTCGTGACCATATTCGAGAAGTGCATAACAACACTCAAATTGTGGTAGCCAATGTGGGTGAAGATGGTAATATTATAATGCACGAAAACGTCGAGCTGGAAGGAATGGAAGATTTTAAGGCGACCACATCGATTTTACCGGATGTTGAACCGATGGACGAAATTCAAGCCGAAACCACCGACGAAGATTTATAA
Protein Sequence: MMLVCPLCCGEKFSCAESLKYHLLSMTVNIYCPSCNKLCDGIPQLTEHLDKECHQPVSGNGLGLTAIKEEDDTCKNESSCDKPHMDEETTIDQIELDDPTDEILDPNSFQSDTSVVLDGESLVVTGHENGEIQEEVFSCSSCGVNFTSIMEHIQQYHDGQEVVVEMSESTVEQISKPEQLLELQDKLNKANDENTEDSSMESGEEQDAKYPQVLNTLKQEECVDRDGRVYTRKVVQIEKFWIDEKSGEAKPSTNRRQAICERYNLGADGELVAMGKDDEAKDDKKVLQVYTCSRCQMQFQKITHFYKHTCNINRANEYRCAHCDVCFNNSKSLCAHMKAHKVMNPLAHVSSATASAPFLCTKCDTIFPTNKSLRLHQRMHDPIKIKEIEAPVDYGITGPPDVSDVNKPREMFICPVCTKTYDKVYEAVHMETHNDEEDFHCDICNRKFYTHDNLKMHMRVHAGGKPFSCTYCKHAFDTGEALSEHMETHSKDTLVDRYSCGFCGRKFARPHEKVKHERIHTGEKPHECEICGKTFRVSYCLTLHMRTHTGARPYICKHCGKRFKAHSVYNHHLLTHSDERNYKCPYCPKAFKTGVQLAGHKNSHTKPFSCTECNRPFASLYAVRSHMETHKRENNLKFSCYLCGASYARNFALRDHIREVHNNTQIVVANVGEDGNIIMHENVELEGMEDFKATTSILPDVEPMDEIQAETTDEDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01349886;
90% Identity: -
80% Identity: -