Basic Information

Insect: Sisyra terminalis
Gene Symbol: -
Assembly: GCA_958496175.1
Location: OY292275.1:11931563-11935908[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.9e-05 0.0019 18.7 0.6 1 23 134 156 134 156 0.95

2 15 0.0015 0.097 13.4 1.1 3 23 164 184 163 184 0.99

3 15 0.00012 0.008 16.8 0.1 1 23 298 320 298 320 0.98

4 15 1.1 72 4.3 0.1 1 23 326 349 326 349 0.93

5 15 0.00012 0.0079 16.8 3.8 1 23 376 398 376 398 0.97

6 15 0.033 2.2 9.1 0.0 1 23 411 433 411 433 0.95

7 15 0.059 3.9 8.3 0.2 1 23 439 462 439 462 0.92

8 15 0.69 46 5.0 1.8 3 19 471 487 470 488 0.95

9 15 0.00073 0.048 14.3 3.6 1 23 497 519 497 519 0.97

10 15 0.0026 0.17 12.6 0.3 2 23 525 546 524 546 0.97

11 15 1e-05 0.00067 20.2 0.4 1 23 554 576 554 576 0.98

12 15 0.0044 0.29 11.9 0.2 3 23 584 604 582 604 0.97

13 15 0.00014 0.0092 16.6 0.3 1 23 610 632 610 633 0.95

14 15 0.095 6.3 7.7 0.1 1 23 647 669 647 669 0.97

15 15 0.0013 0.083 13.6 0.1 1 20 1004 1023 1004 1026 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.9e-05	0.0019	18.7	0.6	1	23	134	156	134	156	0.95
2	15	0.0015	0.097	13.4	1.1	3	23	164	184	163	184	0.99
3	15	0.00012	0.008	16.8	0.1	1	23	298	320	298	320	0.98
4	15	1.1	72	4.3	0.1	1	23	326	349	326	349	0.93
5	15	0.00012	0.0079	16.8	3.8	1	23	376	398	376	398	0.97
6	15	0.033	2.2	9.1	0.0	1	23	411	433	411	433	0.95
7	15	0.059	3.9	8.3	0.2	1	23	439	462	439	462	0.92
8	15	0.69	46	5.0	1.8	3	19	471	487	470	488	0.95
9	15	0.00073	0.048	14.3	3.6	1	23	497	519	497	519	0.97
10	15	0.0026	0.17	12.6	0.3	2	23	525	546	524	546	0.97
11	15	1e-05	0.00067	20.2	0.4	1	23	554	576	554	576	0.98
12	15	0.0044	0.29	11.9	0.2	3	23	584	604	582	604	0.97
13	15	0.00014	0.0092	16.6	0.3	1	23	610	632	610	633	0.95
14	15	0.095	6.3	7.7	0.1	1	23	647	669	647	669	0.97
15	15	0.0013	0.083	13.6	0.1	1	20	1004	1023	1004	1026	0.94

Sequence Information

Coding Sequence: ATGGAGGAAAGTTTCAATATAGCCTGGGACGACGGCACGGCCGTCGAGCAACTGGATATGTGCGAAGAAGTTGTCGTCCAAGACATTGATAATGGACCGATACAACACACTAGCCACGACGAAAATGTTTTGTATATCCCGGAAAATGTAGACAATAATGTTATTTACATGAACTCGGAAGAGGTTCTGGATGAACAACAAGAAGAAATTCCGTTAACCGAAGAAACCTATATGCAATGTGATGTTGCCGAAGAAGTTATAGCGGAAGAATGGATAGAGTCACAATCAGGAGAGAGAGTGGAAGTTGTCGGAAATCTAACTACAAATCAAGTGGAAAACACTGATGATATCGAAATTCCATTACCTACAGACCAAGATGAATACACCGCCAGCAGACCATATCCGTGCGACTTTTGCAGTCGCCGCTTTCGCAAGAAAGCGAACCTAATCAACCACATGGTAGCCCATCAAACCGATCGTCCTCACGGTTGCAATTTATGTGGCGCAAGATATATAAGAAAGTGCGATCTAATGAACCATTTAAAAATTCACGCCTATGTACCTGAACCAGAAGCCTACGAAGATGATGAAGACGACATGAACTACGAATACCAACATCCCGAAACCGAACgcccaagaaaaaagaaatccCAATCAAAGAAACGAAAGTCCAAGTTGAGAATCAAAGAGGAAGTGATCGAAGAAGATAAATATTCGCTCCCCTCCAGGTCTTACGATTATGTTGATGAGGATATGAGACTACTCAACGAAATGGCAAATAGTTCGGCCAGAACTGTAGAGTATGGGAGTCCAGAATATAATGAAATTGTTCCTCCGGAAAATCATCCCGTGAGTGAACCTCGATATCCGATTACAGATCCGCGAAAGCCCTTTGTTTGTCAACATTGTGGGGTGGGATTTGCTCGAGAGAAAGCTTTAGCATCGCATGCTCGAATTCATGGAGGTGATAGTCCTTTTGAATGTGAAACTTGCGGAGATATGTTTTGGGATATTGGTTTACTTAAGGAACATGTAAAGAATAAGCATGGTGAACAGGCAAATAATGTGTCTTATGATGATGACGACGATGAGGATTATGTGGATGATGATGAAAGATATGGTGACTTTTTCTGTCAAACTTGTGGCATGACCTTCCACAGACAAGACCTACTACGACGTCATAGTAGAATACATGTCAAAGAAGAATATGTTAATGATTCCGAGTTTGGTCATGTTTGTAATGTGTGTGGGGATTCTTTTTCGGAGGCCTTAGATTTATTAGCACATGCAGAAATCCACGCACGTCTCAACGTTCACCGTTGTCTGCTATGTGGCGAAACTTTCGACCAAGAAATAGCAATAGCTACACATATATCCCAACGCCACGCAAAAACAATGCCTCCAAACTCTTGCATGCTATGCGGAAAATTATGTAAGGATCGCCGCACGTTGTTGAAACATTCATGGGAACattccaaagaaaaatcattttcttgttCGAAATGTGCGAAGAGTTTTCACAATCGTGCTCGATTGCGACGACATATGGTGTCGCATAGGAATAAATCGGTCACATGCGATATATGTGGGGAAGATTTTCCCGATGGACGGTCTTTGATGAATCATCGTCATAGTCATACCAATGTTTCTGGTCGCCAGTTTCCATGTCGAGAATGTGGAAAGACGTTTGGTTCGCGTAGTTCGCAACAAATTCATATTCGAATACATACTGGAGAGCGACCATATGGATGTCGGTTTTGTTGGAAAGCTTTTGCAGATGGAGGAACTTTACGAAAACATGAACGAATTCATACAGGTGAAAAACCTTATGCGTGTGCGGTTTGTCCACGAGCATTTAATCAGCGCGTAGTTTTGCGGGAACATATTCGCTCCCATCACTCTGGACCTGATGCTAAATTCGGAACTTCTTTAACTCCTTATTCTTGTGCTGTTtgcaatgatttattttctactGCTCAGGATTTAATTCTACATCTGATACAGCACTGTGATTTAAATACCGCTATGCGAAGGCAGCCTCAAGTAGGTCCCCGCAAATATAAGCGTCGTAGGAAACTGAAACCTCATGAGCTCGAACGCATCACAGTATCTGAAAAAGATCACGACGACACTGATTTCAGACATTCAGATTCCGATGATAATACGAAACGAAAATTGGGTAAAAAGAGTAGAAAAAATAAGGCCACCATGGAGGATAACTTTGATGCAGTGTATACAGCGTATGAGCCTCCTCCACCACCGGTTAACAGTGTTCCAAGTACCACAAAATCTACACGAGGAAGGAAGAAGAAAGTTGTAGCCGTCAATGAAAGCCAATCCGTTCCGATGCCATCCCGACCAAAAATGATTCACACACAAAAAACGAGAGTTCCCGTGGAAGTAAGTGGAGCGGATGGTAATAAAATTCGTCACAAAACCAAAACTTTAATAACCCGCACGGCTCCTACCATGCTATCAAACTCCAATTTAAACGAAAAGGTCGAACGTAACGGTGAAAGAAACAGACCtagaacaaaaaatgtaagttaCCATGTGCTCCAACCAGAAAAGTACACTCCTGCAACTTTTGAGAATCAAGTGCCATTGGTAAAGTTAGACTCCGAATCAAAAAGAGATAATTACATGGAGTTAGaggaaatgtttaaaaatatgcacAACGAATATGAAGAAGAGGAACACACAGCCCTTGGAATCGAATCGAATTTCATTGTACAAAATATTGAGGTGGACGAAAATATTGAGCAGGAAGTATGTATCGAGGAAGAGGTCACCGACAGTCACTTGGAAGAGGTAATTAACGAGGATATTAAACAATCAGAAGCCGTTCCCATTCAACTTTTTAAAGCTGGTCACTTTAAACAACCCAACAGTAATTCCAAAATGATACTTCCCAACACCTACGAACATCATTCCGTTAAATCCGAACCGGTCGAAACTATGTCTTTACATGAACTAGCAGAACTTTCCATGCAACATGCACAGAATAAATTCAAATGCGAAATGTGTAGTGCTTCTTTTTCCGATCGAGCCCAGCTTTTAATCCATGTTCCAATTCACATCTGA
Protein Sequence: MEESFNIAWDDGTAVEQLDMCEEVVVQDIDNGPIQHTSHDENVLYIPENVDNNVIYMNSEEVLDEQQEEIPLTEETYMQCDVAEEVIAEEWIESQSGERVEVVGNLTTNQVENTDDIEIPLPTDQDEYTASRPYPCDFCSRRFRKKANLINHMVAHQTDRPHGCNLCGARYIRKCDLMNHLKIHAYVPEPEAYEDDEDDMNYEYQHPETERPRKKKSQSKKRKSKLRIKEEVIEEDKYSLPSRSYDYVDEDMRLLNEMANSSARTVEYGSPEYNEIVPPENHPVSEPRYPITDPRKPFVCQHCGVGFAREKALASHARIHGGDSPFECETCGDMFWDIGLLKEHVKNKHGEQANNVSYDDDDDEDYVDDDERYGDFFCQTCGMTFHRQDLLRRHSRIHVKEEYVNDSEFGHVCNVCGDSFSEALDLLAHAEIHARLNVHRCLLCGETFDQEIAIATHISQRHAKTMPPNSCMLCGKLCKDRRTLLKHSWEHSKEKSFSCSKCAKSFHNRARLRRHMVSHRNKSVTCDICGEDFPDGRSLMNHRHSHTNVSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDAKFGTSLTPYSCAVCNDLFSTAQDLILHLIQHCDLNTAMRRQPQVGPRKYKRRRKLKPHELERITVSEKDHDDTDFRHSDSDDNTKRKLGKKSRKNKATMEDNFDAVYTAYEPPPPPVNSVPSTTKSTRGRKKKVVAVNESQSVPMPSRPKMIHTQKTRVPVEVSGADGNKIRHKTKTLITRTAPTMLSNSNLNEKVERNGERNRPRTKNVSYHVLQPEKYTPATFENQVPLVKLDSESKRDNYMELEEMFKNMHNEYEEEEHTALGIESNFIVQNIEVDENIEQEVCIEEEVTDSHLEEVINEDIKQSEAVPIQLFKAGHFKQPNSNSKMILPNTYEHHSVKSEPVETMSLHELAELSMQHAQNKFKCEMCSASFSDRAQLLIHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01349068;
90% Identity: -
80% Identity: -