Basic Information

Insect: Sisyra nigra
Gene Symbol: -
Assembly: GCA_958496155.1
Location: OY292314.1:2332079-2335206[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.4e-05 0.002 18.7 0.6 1 23 134 156 134 156 0.95

2 15 0.0012 0.099 13.4 1.1 3 23 164 184 163 184 0.99

3 15 0.0001 0.0081 16.8 0.1 1 23 297 319 297 319 0.98

4 15 0.67 55 4.7 0.1 1 23 325 348 325 348 0.94

5 15 0.00012 0.0099 16.5 3.9 1 23 375 397 375 397 0.97

6 15 0.031 2.5 8.9 0.0 1 23 410 432 410 432 0.95

7 15 0.09 7.3 7.5 0.2 1 23 438 461 438 461 0.90

8 15 0.031 2.6 8.9 2.1 3 19 470 486 469 487 0.95

9 15 0.0006 0.048 14.3 3.6 1 23 496 518 496 518 0.97

10 15 0.0021 0.17 12.6 0.3 2 23 524 545 523 545 0.97

11 15 8.3e-06 0.00068 20.2 0.4 1 23 553 575 553 575 0.98

12 15 0.0036 0.29 11.9 0.2 3 23 583 603 581 603 0.97

13 15 0.00011 0.0093 16.6 0.3 1 23 609 631 609 632 0.95

14 15 0.022 1.8 9.4 0.1 1 23 646 668 646 668 0.96

15 15 0.001 0.084 13.6 0.1 1 20 1000 1019 1000 1022 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.4e-05	0.002	18.7	0.6	1	23	134	156	134	156	0.95
2	15	0.0012	0.099	13.4	1.1	3	23	164	184	163	184	0.99
3	15	0.0001	0.0081	16.8	0.1	1	23	297	319	297	319	0.98
4	15	0.67	55	4.7	0.1	1	23	325	348	325	348	0.94
5	15	0.00012	0.0099	16.5	3.9	1	23	375	397	375	397	0.97
6	15	0.031	2.5	8.9	0.0	1	23	410	432	410	432	0.95
7	15	0.09	7.3	7.5	0.2	1	23	438	461	438	461	0.90
8	15	0.031	2.6	8.9	2.1	3	19	470	486	469	487	0.95
9	15	0.0006	0.048	14.3	3.6	1	23	496	518	496	518	0.97
10	15	0.0021	0.17	12.6	0.3	2	23	524	545	523	545	0.97
11	15	8.3e-06	0.00068	20.2	0.4	1	23	553	575	553	575	0.98
12	15	0.0036	0.29	11.9	0.2	3	23	583	603	581	603	0.97
13	15	0.00011	0.0093	16.6	0.3	1	23	609	631	609	632	0.95
14	15	0.022	1.8	9.4	0.1	1	23	646	668	646	668	0.96
15	15	0.001	0.084	13.6	0.1	1	20	1000	1019	1000	1022	0.94

Sequence Information

Coding Sequence: ATGGAGGATAGTTTTACATTGACATGGGACGAGGGTCCCAGTGTCGAGCAGCTCGACATGTGCGAAGAAGTTGTCGTCCAGGACATTGACAACGGGCCGATAGAACATGCCACCCATGACGACAACGTTCTGTACATTCCGGACAACGTGCACAACAACGTGATCTACATGAACTCTGAAGAAGTGCTCGAAGAGCACCAAGAAGAAATTCCCCTAACCGAAGAAGCTTATATGCATTGTGATGTGGCTGAAGAAGTGATTGCCGAGGAATGGATCGAGTCACAATCAGGCGAACGggtgGAAGTGGTTGGAAATCTTGCGACTAATCAAGTTGAAAACACAGATGATATTGAAATCCCTTTACCGACCGATCAAGATGAATACACGGCTAGTCGACCGTATCCTTGCGATTTTTGTAGTCGTCGTTTTCGTAAAAAGGCTAATTTGATTAATCATATGGTGGCGCATCAAACCGATCGACCCCATGGTTGTAATTTATGCGGCGCTCGATATATTCGCAAGTGCGATTTGATGAACCATTTGAAAATTCACGCTTACGTACCTGAACCAGAAGCCTATGAAGATGACGAGGACGACATGAACTACGAGTACGAGCTACAAGAGCCTGAACGACCACGCAAGAAACGAACCACATCGAAAAAACGAAAATCAAAACTACGAATCAAAGAAGAAGTGATGGACGAGGACAAATATTCAGCACCGTCTCGATCATACGACTATGTCGATGAAGATATGCGTCTGTTAAATGAAATGACCAGTTCTGCCAGAACCGTGGAATATGGAAGTCCGGAATATAATGAAATCGTTCCACCAGAAAATCATCCAGTGAGCGAACCTCGTTATCCGATCACAGATCCAAGAAAACCGTTCGTCTGTCAACATTGTGGTGTGGGTTTTGCTCGGGAGAAGGCGCTAGCGTCGCATGCTCGAATACACGGTGGGGATAGTCCATTTGAATGTGAAACTTGTGGTGATATGTTTTGGGATATGGGGCTGCTCAAGGAGCATGTGAAAAATAAGCATGGCGAGCAAGCCGTGAATATGTCgtatgatgatgatgacgacGAAGATTATGTTGATGACGATGAGAGAtatggtgattttttttgtcAGACTTGCGGTATGACGTTTCATCGTCAAGATTTATTACGACGACATAATCGGATTCATGTCAAAGAGGAGTATGTGAATGACTCGGAATTTGGACATGTTTGTAATGTGTGTGGAGATTCATTTTCAGAGGCCTTAGAACTGCTGGCACATGCCGAGATTCATACCCGACTCAATATGCATCGCTGTTTGTTATGCGGCGAGTCTTTCGATCAAGAATTGGCAATTGCCACGCATATATCACAACGACACGCTAAGACTATGCCCCCCAACTCTTGTATGTTGTGTGGTAAGTCGTGCAAAGATCGTCGTACACTGTTAAAACATTCATGGGAACATTCCAAGGAAAAGTCGTTTTCTTGTTCGAAATGTGCGAAAAGTTTTCATAATAGAGCCCGTTTGCGACGACATATGGTCTCGCATCGTAACAAGTCGGTCACTTGCGATATTTGCGGTGAAGATTTCCCTGATGGTCGATCGCTGATGAATCATCGACATAGTCATACGAATGTGTCGGGACGACAATTTCCGTGTCGGGAGTGTGGCAAAACGTTTGGCTCGAGAAGTTCACAACAGATTCATATACGGATACATACGGGCGAGAGGCCGTATGGATGTCGGTTTTGTTGGAAAGCCTTCGCTGACGGTGGTACGTTACGTAAACACGAAAGAATTCATACGGGTGAAAAGCCGTATGCTTGTGCGGTGTGTCCACGTGCATTTAACCAACGAGTCGTCCTTCGGGAACATATACGATCACATCATTCAGGCCCCGATGCCAAGTTCGGAACCTCACTAACGCCATACTGTTGTGCCGTGTGCAACGACATGTTTGCAACAGCCCAAGATTTAATCGTACATCTGATTCAACATTGTGATTTAAACACGGCAATGCGTCGCCAGCCGCAAGTGGGGCCTCGAAAATATAAACGCCGCAGAAAACTTAAACCACATGAACTCGAGAGAATTACCGCCGCTGAAAAAGATCAAGACGACACTGATTATAGACATTCAGACTCGGATGATAACATTAAAAGGAaattaggtaataaaaagagTAAACGAGTTAAAGAGGAAAGTTTTGAGCCGCCCACGTTTCATCCGTACGAACCACCGGCTCCGCCGGTTAATAACGTAGTGCCGAAATCCACCAGGGGTCGTAAGAAAAAAGTTGTCGTTCCGACAGAGGCGCCACCCGCGCCCATGCCATCCCGACCAAAAATGATTCACACCCAAAAAACGCGAGTTCCCGTCGAAGTGATCGGCACGGACGGTAATAAAATTCGTCACAAAACCAAAACGTTAATCACCCGAACAGCACCGACTGTCTTAACGAACTCGGTTGAAAAGATGGACCGTAACGGTGAACGGAATCGACCCCGAACGAAAAACGTGAGCTATCACGTGTTACAACCCGATAAATATACGACAGCGACGTTCGATTCGAATCATATAGTGCCATCAGTGAAATCCGAACCGGAGACAAAACGTGAAAATTACATGGACCTGGAAGAGATGTTCAAGCACATGCACAACGAGTATGAAGAGGACGAAGAACATACCGCGTTGGGGATCGAGTCGAATTTTATCGTTCAAAATATTGAGGTCGACGAGAATATTGAACAGGAGGTGTGTATTGAAGAGGAAGTTACCGATTCACATTTGGAGGAAGTGATTAGTGAGGAGATGACGACGCATCAGAGTGAATCTGATGTGGTTCCGATGCAACTGTTCAAAGCCGAGAACCACTATCAAGAGGATGATACGAAACCGTTCACCTATGAAACGCGTGGCATTAAACCGGAACTCGAAACGGTGTCATTGCACGAGCTAGCCGAGCTTTCGATGCAACATGCACAGAACAAGTTCAAATGTGAAATGTGCAGTGCTTCATTTTCGGATCGTGCCCAACTACTGATCCATGTTCCAATTCATATCTGA
Protein Sequence: MEDSFTLTWDEGPSVEQLDMCEEVVVQDIDNGPIEHATHDDNVLYIPDNVHNNVIYMNSEEVLEEHQEEIPLTEEAYMHCDVAEEVIAEEWIESQSGERVEVVGNLATNQVENTDDIEIPLPTDQDEYTASRPYPCDFCSRRFRKKANLINHMVAHQTDRPHGCNLCGARYIRKCDLMNHLKIHAYVPEPEAYEDDEDDMNYEYELQEPERPRKKRTTSKKRKSKLRIKEEVMDEDKYSAPSRSYDYVDEDMRLLNEMTSSARTVEYGSPEYNEIVPPENHPVSEPRYPITDPRKPFVCQHCGVGFAREKALASHARIHGGDSPFECETCGDMFWDMGLLKEHVKNKHGEQAVNMSYDDDDDEDYVDDDERYGDFFCQTCGMTFHRQDLLRRHNRIHVKEEYVNDSEFGHVCNVCGDSFSEALELLAHAEIHTRLNMHRCLLCGESFDQELAIATHISQRHAKTMPPNSCMLCGKSCKDRRTLLKHSWEHSKEKSFSCSKCAKSFHNRARLRRHMVSHRNKSVTCDICGEDFPDGRSLMNHRHSHTNVSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDAKFGTSLTPYCCAVCNDMFATAQDLIVHLIQHCDLNTAMRRQPQVGPRKYKRRRKLKPHELERITAAEKDQDDTDYRHSDSDDNIKRKLGNKKSKRVKEESFEPPTFHPYEPPAPPVNNVVPKSTRGRKKKVVVPTEAPPAPMPSRPKMIHTQKTRVPVEVIGTDGNKIRHKTKTLITRTAPTVLTNSVEKMDRNGERNRPRTKNVSYHVLQPDKYTTATFDSNHIVPSVKSEPETKRENYMDLEEMFKHMHNEYEEDEEHTALGIESNFIVQNIEVDENIEQEVCIEEEVTDSHLEEVISEEMTTHQSESDVVPMQLFKAENHYQEDDTKPFTYETRGIKPELETVSLHELAELSMQHAQNKFKCEMCSASFSDRAQLLIHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01349872;
90% Identity: -
80% Identity: -