Basic Information

Insect: Sisyra terminalis
Gene Symbol: -
Assembly: GCA_958496175.1
Location: OY292275.1:38172066-38175220[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2e-05 0.0013 19.2 1.5 1 23 416 438 416 438 0.97

2 18 0.54 36 5.3 5.6 1 20 444 463 444 466 0.91

3 18 1.1e-05 0.00073 20.0 1.2 1 23 472 494 472 494 0.99

4 18 2.4e-06 0.00016 22.2 1.8 3 23 502 522 500 522 0.98

5 18 3.1e-05 0.002 18.6 4.6 1 23 528 550 528 550 0.99

6 18 2.9e-05 0.0019 18.7 5.3 1 23 556 578 556 578 0.97

7 18 1.9e-05 0.0012 19.3 7.6 1 23 584 606 584 606 0.97

8 18 1.1e-07 7.5e-06 26.3 2.7 1 23 612 634 612 634 0.98

9 18 8.4e-05 0.0056 17.3 6.7 1 23 640 662 640 662 0.97

10 18 2.5e-05 0.0016 18.9 4.9 1 23 668 690 668 690 0.97

11 18 1.7e-07 1.1e-05 25.8 2.9 1 23 696 718 696 718 0.98

12 18 7.6e-06 0.0005 20.5 7.9 1 23 724 746 724 746 0.98

13 18 3.9e-06 0.00026 21.5 6.7 1 23 752 774 752 774 0.98

14 18 2e-05 0.0013 19.3 7.7 1 23 780 802 780 802 0.98

15 18 3.1e-05 0.002 18.6 7.1 1 23 808 830 808 830 0.96

16 18 0.00019 0.013 16.1 0.2 1 23 836 858 836 858 0.97

17 18 0.028 1.9 9.3 4.6 1 23 868 890 868 890 0.99

18 18 8.1e-07 5.4e-05 23.6 0.9 1 23 896 918 896 918 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2e-05	0.0013	19.2	1.5	1	23	416	438	416	438	0.97
2	18	0.54	36	5.3	5.6	1	20	444	463	444	466	0.91
3	18	1.1e-05	0.00073	20.0	1.2	1	23	472	494	472	494	0.99
4	18	2.4e-06	0.00016	22.2	1.8	3	23	502	522	500	522	0.98
5	18	3.1e-05	0.002	18.6	4.6	1	23	528	550	528	550	0.99
6	18	2.9e-05	0.0019	18.7	5.3	1	23	556	578	556	578	0.97
7	18	1.9e-05	0.0012	19.3	7.6	1	23	584	606	584	606	0.97
8	18	1.1e-07	7.5e-06	26.3	2.7	1	23	612	634	612	634	0.98
9	18	8.4e-05	0.0056	17.3	6.7	1	23	640	662	640	662	0.97
10	18	2.5e-05	0.0016	18.9	4.9	1	23	668	690	668	690	0.97
11	18	1.7e-07	1.1e-05	25.8	2.9	1	23	696	718	696	718	0.98
12	18	7.6e-06	0.0005	20.5	7.9	1	23	724	746	724	746	0.98
13	18	3.9e-06	0.00026	21.5	6.7	1	23	752	774	752	774	0.98
14	18	2e-05	0.0013	19.3	7.7	1	23	780	802	780	802	0.98
15	18	3.1e-05	0.002	18.6	7.1	1	23	808	830	808	830	0.96
16	18	0.00019	0.013	16.1	0.2	1	23	836	858	836	858	0.97
17	18	0.028	1.9	9.3	4.6	1	23	868	890	868	890	0.99
18	18	8.1e-07	5.4e-05	23.6	0.9	1	23	896	918	896	918	0.96

Sequence Information

Coding Sequence: ATGAATTCGGGAGATCAACATAATTTAATACCGACATCGGCTGCCCCACCGGTACCAATTACGTCATCTGAGGAATCAAATCGTACCCCGGTTACGACCACAGTTCCAACCGATTTGAGAGTTAATCCAACGGCGTTAAATGCTGTGGCGTTATCAAGTGTAGCTAAATATTGGGTTTTAACTAACTTACTACCAGGTCCAATACCACAAGTTTCTGTTTACGGTCTTCCAACTACTACACCCAAAGTAGAAAATGGAAAATCTGGACAggaTGGTATGCTTCAACAGCACTCGGGTATACTTCCATCAGATTCACTTTTACTACACCATAATACCAGTAACAATATAAATGCACAAATACCTGTTAGCATATCTACATCACAAGGTGTTGCTAATATTTCAATACCAACATCTGCTATGTCGCATTTGGATAATCAACAGGGAAATCAATCCAATGAAAACCAACATCacaatcaacaatcaaacaaTCACCAGCATTCACAGCAAATAAATTCAAACACCCATCAACAGCACGTAAACAACAATCAAAATGCAGGAAATCAATCGTTGGTCCAAGTGCAAGTTCAAGAAAATAATCTTGTTAATGTTATGGATGAGCAAAAAGATTCAAAATCAGAATTGGCTCACATAACACAAGACATGAATCAacatgaaaatcaaataaatcaacCAATTAATCAAGGATTAACAGTACAACAATTACAGCAATTAGGGGTACACCAGGTTTTAGATAATGTGGAAAACGTTGGCAACGCAGATACTTCGATATCAACAAATCAAGACGGAGAATTAGTAGTAAAACATGAGAAAGGAAATGGGAACTgtgcaaaaattttaagtactgCACAATTTCAAATGCCCGATATTAAACCGGGACATCATATGATGGATGTCCGTACAGTCGATGGCAGTATTGTGAAAATTTCAGCTGGTATCCAGGATCAAGATTTAGCGAAATCGTTAGGTGTAGAAATGGTACAAAATATGTACAAAGTTAATGTAGAAGATATTAATCAACTTTTGGCTTACCATGAAGTGTTTGGTAAATTGCAAACCGATATTCAATCGCCGACGCCAACCCAGAATAATAGTCATATTGTAACTAATGTTTCTGGTACGACTACTGTTAATCCTCAATCTCcgaatttaaatattgttaaggGTGAGCAAAAACCAAGTACGAGTACTTTAGGAACGAGTAGCCCTCCAGTTATTTCTGGCACCCACGTATGTGATTTATGTGGTAAAATGTTTCCGTTTCGATATCAGTTAATTGTACATCGACGTTATCATATTGAACGAAAACCATTTTGCTGTCAAGTTTGTGGTAAAGCATTTACTTGTGCTGCTGAATTGACATCTCATGGCAAATGCCATTTAGGCTGTAGTATGTATACGTGTGCGGTATGTTTTCATGTCTTTGCCAATTCGGCGTCCTTAGAGCGTCATATGAAACGCCATTCTACCGATAAACCTTACGGTTGCACTATTTGTGGTAAATCATTTGCTCGCAAAGAACATTTGGATAATCATACTCGATCACATACTGGCGAGACCCCATATCGATGTCAATATTGCGCTAAAACGTTTACTCGCAAAGAACATATGGTTAATCATGTTCGCAAACATACAGGTGAAACTCCCCATCGTTgcgaaatttgtaaaaaatcttttactcGAAAAGAACATTTTATGAATCATGTAATGTGGCATACCGGAGAGACTCCTCATCATTGCACATTGTGTGGAAAAAAGTACACTCGCAAGGAACACTTGGCGAATCATATGCGTTCGCATACCAACGACACGCCATTCCGTTGTGAGATTTGCGGTAAATCGTTCACTCGTAAAGAACATTTTACGAATCATATTATGTGGCATACTGGAGAAACTCCGCATCGATGTGACTTCTGCTCGAAAACATTTACACGCAAGGAACATTTGTTGAATCACGTACGTCAACACACCGGCGAATCGCCTCATCGTTGCGATTACTGCGCTAAGTCTTTCACACGCAAAGAACATTTAGTAAACCATGTTCGGCAGCATACTGGTGAAACGCCATTCCGATGCAGTTATTGTCCCAAGGCTTTCACACGTAAGGACCATCTCGTTAACCACATCCGTCAACATACAGGCGAGTCGCCTCACAAATGTACATATTGTACCAAGAGTTTCACAAGAAAAGAACATTTAACCAACCACGTACGGCAGCATACCGGCGAATCTCCACATCGTTGTCAGTATTGTTCTAAGTCGTTTACTCGTAAGGAGCATCTAACAAACCACGTACGTATTCACACCGGTGAATCTCCACATCGTTGTGAATTCTGCCAGAAAACCTTTACTCGTAAAGAACATTTGACCAATCATTTACGTCAACATACCGGTGAAACTCCACATTGTTGCAGTGTTTGTTCAAAACCATTTACTCGCAAAGAACATTTGGTCAATCACATGCGGTCGCATACTGGCGAGCGACCATTTGCTTGCGGAGAATGTGGAAAATCATTCCCGTTAAAAGGAAACTTATTGTTCCATCAACGCTCCCATAATAAAGGCGCAAATGCTGAACGACCATTCAAATGCGATTTGTGTCCAAAAGATTTCATGTGCAAGGGTCATTTGGTCTCACATAGGCGTTCACATAGTGGCGAACGACCTCATGCCTGTCCCGACTGCGGTAAAACCTTTGTCGAAAAAGGTAACATGCTACGTCATTTACGTAAACATAACACGGATACAGCAAATGCAGTCACAACAGGCACCGCTACTGTTAATAATGTGCAACAGCAACAACCTACTGTGTCACAAGCAAACCCTGGCGCTGGACTTCAAATTCCACAAGTTAGTCAAGCAACACAAATGAACACACAAGGTGGTGTTATTTCGCAAACTGTATCATCTGTAGGTCATATGCAATTACATCAACAAGGTAATCATCCCGTAGTCGTTCCCACTTTAAATGGAAATGTCCTAGCGACTTACTAA
Protein Sequence: MNSGDQHNLIPTSAAPPVPITSSEESNRTPVTTTVPTDLRVNPTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPTTTPKVENGKSGQDGMLQQHSGILPSDSLLLHHNTSNNINAQIPVSISTSQGVANISIPTSAMSHLDNQQGNQSNENQHHNQQSNNHQHSQQINSNTHQQHVNNNQNAGNQSLVQVQVQENNLVNVMDEQKDSKSELAHITQDMNQHENQINQPINQGLTVQQLQQLGVHQVLDNVENVGNADTSISTNQDGELVVKHEKGNGNCAKILSTAQFQMPDIKPGHHMMDVRTVDGSIVKISAGIQDQDLAKSLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQTDIQSPTPTQNNSHIVTNVSGTTTVNPQSPNLNIVKGEQKPSTSTLGTSSPPVISGTHVCDLCGKMFPFRYQLIVHRRYHIERKPFCCQVCGKAFTCAAELTSHGKCHLGCSMYTCAVCFHVFANSASLERHMKRHSTDKPYGCTICGKSFARKEHLDNHTRSHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTLCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCDYCAKSFTRKEHLVNHVRQHTGETPFRCSYCPKAFTRKDHLVNHIRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCQYCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCSVCSKPFTRKEHLVNHMRSHTGERPFACGECGKSFPLKGNLLFHQRSHNKGANAERPFKCDLCPKDFMCKGHLVSHRRSHSGERPHACPDCGKTFVEKGNMLRHLRKHNTDTANAVTTGTATVNNVQQQQPTVSQANPGAGLQIPQVSQATQMNTQGGVISQTVSSVGHMQLHQQGNHPVVVPTLNGNVLATY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01349040;
90% Identity: iTF_01349040;
80% Identity: -