Basic Information

Insect: Sisyra nigra
Gene Symbol: -
Assembly: GCA_958496155.1
Location: OY292314.1:16063331-16068731[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.7e-05 0.0014 19.2 1.5 1 23 418 440 418 440 0.97

2 18 0.45 37 5.3 5.6 1 20 446 465 446 468 0.91

3 18 9.2e-06 0.00074 20.0 1.2 1 23 474 496 474 496 0.99

4 18 2e-06 0.00016 22.1 1.8 3 23 504 524 502 524 0.98

5 18 2.6e-05 0.0021 18.6 4.6 1 23 530 552 530 552 0.99

6 18 2.4e-05 0.002 18.7 5.3 1 23 558 580 558 580 0.97

7 18 1.6e-05 0.0013 19.3 7.6 1 23 586 608 586 608 0.97

8 18 9.5e-08 7.7e-06 26.3 2.7 1 23 614 636 614 636 0.98

9 18 7e-05 0.0057 17.3 6.7 1 23 642 664 642 664 0.97

10 18 2.1e-05 0.0017 18.9 4.9 1 23 670 692 670 692 0.97

11 18 1.4e-07 1.1e-05 25.8 2.9 1 23 698 720 698 720 0.98

12 18 6.4e-06 0.00052 20.5 7.9 1 23 726 748 726 748 0.98

13 18 3.2e-06 0.00026 21.5 6.7 1 23 754 776 754 776 0.98

14 18 1.6e-05 0.0013 19.2 7.7 1 23 782 804 782 804 0.98

15 18 2.6e-05 0.0021 18.6 7.1 1 23 810 832 810 832 0.96

16 18 0.00016 0.013 16.1 0.2 1 23 838 860 838 860 0.97

17 18 0.023 1.9 9.3 4.6 1 23 870 892 870 892 0.99

18 18 6.7e-07 5.5e-05 23.6 0.9 1 23 898 920 898 920 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.7e-05	0.0014	19.2	1.5	1	23	418	440	418	440	0.97
2	18	0.45	37	5.3	5.6	1	20	446	465	446	468	0.91
3	18	9.2e-06	0.00074	20.0	1.2	1	23	474	496	474	496	0.99
4	18	2e-06	0.00016	22.1	1.8	3	23	504	524	502	524	0.98
5	18	2.6e-05	0.0021	18.6	4.6	1	23	530	552	530	552	0.99
6	18	2.4e-05	0.002	18.7	5.3	1	23	558	580	558	580	0.97
7	18	1.6e-05	0.0013	19.3	7.6	1	23	586	608	586	608	0.97
8	18	9.5e-08	7.7e-06	26.3	2.7	1	23	614	636	614	636	0.98
9	18	7e-05	0.0057	17.3	6.7	1	23	642	664	642	664	0.97
10	18	2.1e-05	0.0017	18.9	4.9	1	23	670	692	670	692	0.97
11	18	1.4e-07	1.1e-05	25.8	2.9	1	23	698	720	698	720	0.98
12	18	6.4e-06	0.00052	20.5	7.9	1	23	726	748	726	748	0.98
13	18	3.2e-06	0.00026	21.5	6.7	1	23	754	776	754	776	0.98
14	18	1.6e-05	0.0013	19.2	7.7	1	23	782	804	782	804	0.98
15	18	2.6e-05	0.0021	18.6	7.1	1	23	810	832	810	832	0.96
16	18	0.00016	0.013	16.1	0.2	1	23	838	860	838	860	0.97
17	18	0.023	1.9	9.3	4.6	1	23	870	892	870	892	0.99
18	18	6.7e-07	5.5e-05	23.6	0.9	1	23	898	920	898	920	0.96

Sequence Information

Coding Sequence: ATGAATTCGGGAGATCAGCATAATTTAATACCGACATCGGCTGCCCCACCGGTACCAATTACGTCATCTGAGgaATCGAATCGCACTCCGGTTACGACGACAGTTCCGACCGATTTGAGAGTAAATCCAACGGCGCTAAATGCTGTCGCGTTATCCAGTGTAGCGAAATATTGGGTTTTGACTAATTTGTTGCCAGGACCGATTCCACAAGTTTCGGTTTATGGTCTTCCTACTGCTACACCCAAAGTAGAAAATGGAAAAGCTGGACagGATGGAATGCTACAACAACATTCAGGAATTCTTCCATCTGATTCTCTATTATTACATCATAACAGTAATAATATAAATGCACAAATACCTGTTAGCATCTCAACATCACAAGGAGTTGCTAACATTTCGATACCAACATCTGCTATGTCCCATTTGGAAAACCAACAAGGGAACCAATCGAACGATAACCAACATCACAACCAAAATCAACAATCGAACCATCAACATTCACAACAAATCAATTCAAACACCCACCAACAACAGCAGCACGTATCCAACAATCAGAATGCCGGAAACCAATCATTGGTCCAAGTACAAGTTCAAGACAACAATATGGTTAATGTTATGGAAGAGCAGAAAGATTCCAAATCTGACCTGGCTCACATAACACAGGAAATGAACCAgcatgaaaatcaaattaatcaGCCATTAAATCAAGGGTTAACAGTACAACAATTACAGCAGCTAGGAGTGCATCAGGTGTTAGATAATGTTGATAATGTGGGTAATACAGAAACTTCGATATCTACCAATCAGGATGGAGAGTTAGTGGTGAAGCATGAAAAGGGTAACGGGAATTGTACAAAAATTTTGAGTACTGCACAGTTTCAAATGCCAGATATTAAACCGGGACACCACATGATGGATGTTCGTACTGTTGATGGGagtattgtaaaaatttcagcTGGTATTCAGGATCAAGATTTAGCGAAATCATTGGGAGTAGAAATGGTACAAAATATGTATAAGGTTAATGTGGAAGATATTAACCAGTTGTTGGCTTATCATGAAGTGTTCGGTAAGTTGCAGACTGATATTCAGTCGCCGACACCAAATCAGAACAACACTCATATTGTAACTAATGTTTCGGGAACGACAGCTGTTAATCCCCAATCGCcgaatttaaatattgttaaggGGGAGCAAAAACCTAGTACGAGTGCTTTGGGAACTAGTAGTCCACCAGTTATTTCTGGGACTCACGTTTGTGATTTGTGTGGTAAAATGTTTCCGTTTCGATATCAGTTGATTGTACATCGGCGTTACCATATTGAACGAAAACCATTTTGTTGTCAGGTTTGTGGTAAAGCATTTACTTGTGCCGCTGAATTGACTTCACATGGTAAATGCCATTTGGGATGTAGTATGTATACCTGTGCTGTATGTTTTCATGTGTTCGCTAATTCAGCGTCTCTGGAACGCCATATGAAACGACACTCCACCGACAAGCCGTATGGATGTACCATTTGCGGCAAGTCTTTTGCTCGAAAAGAACATTTGGATAATCATACTAGATCGCATACTGGGGAAACACCATATCGGTGTCAGTACTGTGCAAAAACTTTTACTAGAAAAGAGCATATGGTTAACCACGTTCGTAAGCATACTGGAGAAACTCCTCATCGTTGTGAAATTTGTAAGAAGTCTTTCACACGAAAAGAGCATTTCATGAACCATGTGATGTGGCATACTGGCGAAACACCCCACCATTGCACGTTATGCGGTAAGAAATATACTCGCAAAGAGCATTTGGCCAATCATATGCGTTCTCATACAAACGACACGCCCTTCCGATGTGAAATCTGCGGTAAATCATTCACACGAAAGGAGCATTTTACGAATCATATTATGTGGCATACTGGCGAGACTCCGCATCGTTGTGATTTCTGTTCGAAAACCTTCACTCGCAAGGAACATTTATTGAACCATGTGCGTCAACATACCGGCGAATCGCCGCATCGTTGCGATTACTGTGCTAAGTCGTTTACTCGTAAAGAACACTTAGTGAATCACGTTCGACAGCATACCGGTGAAACTCCGTTCCGGTGCAGTTATTGCCCAAAGGCGTTTACTCGTAAGGATCATCTTGTTAACCACATCCGTCAACACACCGGCGAATCGCCACACAAATGTACATACTGTACCAAGAGTTTTACAAGGAAAGAACATTTAACTAATCACGTACGACAGCACACCGGCGAATCACCACACCGTTGTCAGTATTGTTCTAAATCGTTCACCCGTAAAGAGCATCTAACAAACCATGTACGTATTCATACCGGTGAATCACCGCATCGTTGTGAATTCTGTCAAAAAACGTTCACTCGCAAAGAACACTTGACCAATCATTTACGCCAACATACCGGCGAAACTCCGCATTGTTGCAGTGTATGTTCAAAACCGTTTACTCGAAAAGAGCATTTGGTCAATCATATGCGGTCGCATACCGGCGAAAGACCGTTTGCTTGCGGCGAATGCGGCAAATCGTTCCCGCTTAAGGGTAACTTATTGTTTCACCAACGCTCTCATAACAAAGGAGCCAACGCTGAGCGTCCATTCAAATGCGATTTATGTCCAAAAGACTTCATGTGTAAGGGTCATTTGGTGTCACATAGGCGATCACATAGTGGCGAGCGACCACACGCTTGTCCTGATTGTGGTAAGACTTTCGTCGAAAAGGGTAACATGTTGCGTCATTTACGCAAACATAACACGGACACGACCAATGCCGTCACAACCGGAGCCGCGACCGTGAACAACGTTcaacagcagcagcagcagcagcaacCCAGTGCGTCACAAGCGAATCCCGGGGCTGGACTTCAAATTCCGCAAGTTAGTCAAGCGACACAACTGAACACACAAGGTGGGGTCATCTCACAAACTGTATCATCCGTAAGTCACATGCAATTACATCAACAAGGTAGTCATCCAGTAGTCGTTCCCACTTTAAATGGAAACGTTTTAGCgacctattaa
Protein Sequence: MNSGDQHNLIPTSAAPPVPITSSEESNRTPVTTTVPTDLRVNPTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPTATPKVENGKAGQDGMLQQHSGILPSDSLLLHHNSNNINAQIPVSISTSQGVANISIPTSAMSHLENQQGNQSNDNQHHNQNQQSNHQHSQQINSNTHQQQQHVSNNQNAGNQSLVQVQVQDNNMVNVMEEQKDSKSDLAHITQEMNQHENQINQPLNQGLTVQQLQQLGVHQVLDNVDNVGNTETSISTNQDGELVVKHEKGNGNCTKILSTAQFQMPDIKPGHHMMDVRTVDGSIVKISAGIQDQDLAKSLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQTDIQSPTPNQNNTHIVTNVSGTTAVNPQSPNLNIVKGEQKPSTSALGTSSPPVISGTHVCDLCGKMFPFRYQLIVHRRYHIERKPFCCQVCGKAFTCAAELTSHGKCHLGCSMYTCAVCFHVFANSASLERHMKRHSTDKPYGCTICGKSFARKEHLDNHTRSHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTLCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCDYCAKSFTRKEHLVNHVRQHTGETPFRCSYCPKAFTRKDHLVNHIRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCQYCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCSVCSKPFTRKEHLVNHMRSHTGERPFACGECGKSFPLKGNLLFHQRSHNKGANAERPFKCDLCPKDFMCKGHLVSHRRSHSGERPHACPDCGKTFVEKGNMLRHLRKHNTDTTNAVTTGAATVNNVQQQQQQQQPSASQANPGAGLQIPQVSQATQLNTQGGVISQTVSSVSHMQLHQQGSHPVVVPTLNGNVLATY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01349829;
90% Identity: iTF_01349829;
80% Identity: -