Snig001432.1
Basic Information
- Insect
- Sisyra nigra
- Gene Symbol
- -
- Assembly
- GCA_958496155.1
- Location
- OY292313.1:22876609-22878370[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 4.1e-05 0.29 11.5 0.6 12 54 164 206 156 206 0.84 2 8 0.71 5e+03 -2.1 0.0 27 52 281 306 279 308 0.81 3 8 0.009 63 4.0 0.0 23 46 333 356 328 362 0.85 4 8 0.013 91 3.5 0.0 21 48 359 385 355 388 0.87 5 8 0.14 9.5e+02 0.2 0.1 23 46 417 440 411 446 0.81 6 8 0.032 2.2e+02 2.3 0.1 21 43 443 465 435 469 0.84 7 8 0.00082 5.7 7.4 0.0 21 52 471 502 466 504 0.87 8 8 0.00064 4.4 7.7 0.0 21 44 499 522 496 528 0.90
Sequence Information
- Coding Sequence
- ATGGAGGAATCAAGTGAAACAtctctaaataaaatatgtcgTGCTTGTATGGCGGAAAATGTGGAAATGCGTTCAATTTTCGTGCCCGATGAAAACGTTGATACAAATATTCATCTGTCAGAAATGATAATGGCGTACGCTGCTGTTCAGATTACACTTGGAGATGGTCTGCCTGAACAAATATGTATAAATTGTGCTACCCAAGTAAGTAAAACCTACCTGTTTAAATTGCAATGCGAGAAATCGGACGCAGCCCTACGCGAAAGATTGGGACTAGAAAAACTGATTTTACCCAAAGAAGAAATTTTACAAACGCTAAACACAACAGCCGTCTTTGATTCAGAAGAAATTGTTATCAAACCGGAAATCAAAGAACTGCATGAAGATGATGATGACTATGATTGTGAAATGCACGCTGAAATCATCGAATCGGATGATgaggatattaaaaatatacttgAAAAAACCCAGAATAATACACCAAACCAAACCGAATTGGTAAATCCAAtagttcaaacaaaaaaatctcataaatgTCCTAAATGTAAAAAAGTGTTCAATCGTGGTAGTCATTTAAATCGTCATTTACGAGTACATAGTAATGCCAAACCGTTTGTTTGTCCTGTTTGTAGTAAAGGATTTACTCGTAATGATTTACTAATTAGACATAAAATTGTGCATTCTGCTCAAATTCAAACAACTAATACCGAGGCAGATTCTGCAAGTGAAAATCTTGATCTAAAATTAGCTTGTAATTTCTgtgaaaaagtatttaataaaaaagaaagctTAGCATCGCATATGCGAACGCATGCTGGTGTCTTACGGAAAGTGTTATCCTGTGAAGTATGCacgaaaaaattcaacaaaccCAGTCAATTAACGCGTCATACCAAAATTCATGCGTCAGTAAAACCACATATGTGCCAATTATGTGGAAAAGGTTTTGCTCGTGGAGAACAACTTATCAATCATATGAATGTACATTCCGGCGTTAAACCGCACGTTTGTAAAATTTGTGAAAAGGGCTTCAATCAAATTAGTAATCTTAAAGATCACATGCGAACGCACAACGGCGAGAAACCATTTTTGTGTTCGACCTGTGGAAAAGGTTTTAATCAATTGGGCAACTTAAGACAGCATACTGTGAGACACAGTGGTATTAAAGCACATTTATGTAATATTTGTGGTAATGGATTTGCTAGTAAGGGTGAACTGGGTGCTCATCTTCGGAAACATACCGGAGCTCGACCTTACGTTTGTAATATCTGTAATCATGGTTTCACTACTTCTAGTTCATTAACGAAACATAAAAGAATTCACagtggtgaaaaaccgtatgaATGTGATGTTTGTcatatgaaattttcaagaaGTGGTATATTGGCACGTCATAAAAGAACTCATACAGGAGAAAAGCCATATGTATGCACGTTCTGTTCCAAAGCCTTTTCCCAAAGTAATGATTTAAGCTCTCATCTTCGAATTCATACAGGTGAAAAGCCGTACATTTGCGATGTTTGCGGCCAAGCATTTAGACAAAGTTCTGCGTTAAAAACACACAAGAAAGTGCATATGGACAGAAGTAATGTATTGGAAAATATTGATCGTAATACTCTCATTGAAAATCGTGTAGCTACTTTAGCAATTGTCAAATCTGCTTTACTTGGTAGTATGcaataa
- Protein Sequence
- MEESSETSLNKICRACMAENVEMRSIFVPDENVDTNIHLSEMIMAYAAVQITLGDGLPEQICINCATQVSKTYLFKLQCEKSDAALRERLGLEKLILPKEEILQTLNTTAVFDSEEIVIKPEIKELHEDDDDYDCEMHAEIIESDDEDIKNILEKTQNNTPNQTELVNPIVQTKKSHKCPKCKKVFNRGSHLNRHLRVHSNAKPFVCPVCSKGFTRNDLLIRHKIVHSAQIQTTNTEADSASENLDLKLACNFCEKVFNKKESLASHMRTHAGVLRKVLSCEVCTKKFNKPSQLTRHTKIHASVKPHMCQLCGKGFARGEQLINHMNVHSGVKPHVCKICEKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTVRHSGIKAHLCNICGNGFASKGELGAHLRKHTGARPYVCNICNHGFTTSSSLTKHKRIHSGEKPYECDVCHMKFSRSGILARHKRTHTGEKPYVCTFCSKAFSQSNDLSSHLRIHTGEKPYICDVCGQAFRQSSALKTHKKVHMDRSNVLENIDRNTLIENRVATLAIVKSALLGSMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01349045;
- 90% Identity
- iTF_01349045;
- 80% Identity
- iTF_01349045;