Snig014084.2
Basic Information
- Insect
- Sisyra nigra
- Gene Symbol
- -
- Assembly
- GCA_958496155.1
- Location
- OY292317.1:19296305-19297869[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.33 2.3e+03 -1.0 0.1 23 43 187 207 175 211 0.72 2 8 0.0042 29 5.1 0.1 21 44 213 236 210 240 0.91 3 8 0.00089 6.2 7.2 0.1 21 45 241 265 238 269 0.90 4 8 1.5e-05 0.1 12.9 0.1 21 48 269 296 265 299 0.89 5 8 0.00058 4 7.8 0.0 21 44 349 372 344 380 0.90 6 8 0.34 2.3e+03 -1.0 0.0 27 46 411 430 409 436 0.81 7 8 0.93 6.5e+03 -2.4 0.0 21 31 433 443 429 459 0.72 8 8 0.0083 58 4.1 0.0 21 47 461 487 453 490 0.87
Sequence Information
- Coding Sequence
- ATGACAGAGTTTGTCGACTTATCCACCGTTAATTACGACCAAATATGCCGCATTTGTTTGACAGAGGGTGATTTCAAGCCGTTCTTTTCAAAAATCGAAACGGAAGACGATGAAATTCTCTTGTCGGACATGTACTCGTCGATTACTACAATAATCGTTGATGAATTTGATGGTCTACCACTGCAAATATGCGATAATTGCATCTTTCAAGTGaatcagttttatttatttaaaaaacactgTGAGAAAGTTAACGAAGCTCTGCGTCAATATGCAATTCCACGCTGTTCCGaaccaaaaattgaagttgaaaACGAAGAAAATATCGAAGTTCTTCCAGAAGTGGAACAAGAAGGCGAAGAAGAATTTACCAACTATATCATTTTAACCGAGGAAAATGTCGCCACtgaaaacattgaaaatgtCGAAAACGTGGAAACGTCTCCGAATAAACGTAAAAGTTATATGCGTGAATTTGCTTGTGTGATTTGTGGCGAGAAATTTGATAATCGATTAGAGCTAAAAACACATCAGGATAGTGAAAATCATAAGCCGGCACGGCCCTTTGCGTGTCCTAATTGCCCGAAAACGTTTCTCACAGCCAGTCATTTGCGTGGTCATAAATTGGTTCATTCCGACGAAAAACCGTTCGTGTGTAAAATTTGTGATCGACGATTTAATACCAAGCCAAACTTAAAACGCCATGTTatgactcatactggtgaaagacCCCATCATTGTCATATCTGTGGCAAGGCTTTTATACAATCGGTAACCCTTAGAGACCATATGAGAGTTCATACAAAAGAAACACCGTATACTTGTGTTACATGCAATCGTGGATTTAAACAAAGTGGAGAACTTCGAAGGCATATGAAGAAGTTCCACAGTGGAAGTACAGAAGGCACTACACGACCTCCACGTTCTGCTTCTTCACAAggcaaaagtaaaaaaaccaaatcagaaaaatcatttttatgcaGCGACTGTGGAAAGTCGTTTTCTAGTAACACGCTTTTAGCCATCCACAATCGAATTCATACAGGGGAAAAACCATTTACGTGTTCTGTGtgtaataaatcattttctcaAGTGAGTACTTTACGTACTCATATCCTGGTACATACCGGTGAGAAAAAGTTCGATTGTACCCACTGTACAAAGTCCTTTAGACATCGTGTTGCTCTTAAACAGCACGTTCTTATACATATGGGAATTAGGAAATATCGATGTGTTTTTTGTACGAAAAGTTTCACTCAAAGTAGCCAATTGAATTATCATTTACGAACTCATACAGGGGAAAAACCATATTCGTGCCATTTATGTGGTAAGCCATTTGCTTTGAAGGGTAATTTAACAGTTCATGTTCGAACACACACTGGAGAAACTCCTTATGTATGCTCGATATGTGGTAAAGGTTTTTATGACTCAAGCAGCCTGAAAAAACATATACAAAGAGGACATCGAAACATGGATAATCTAactgaagaagaagaagaagtagTCTCTTAA
- Protein Sequence
- MTEFVDLSTVNYDQICRICLTEGDFKPFFSKIETEDDEILLSDMYSSITTIIVDEFDGLPLQICDNCIFQVNQFYLFKKHCEKVNEALRQYAIPRCSEPKIEVENEENIEVLPEVEQEGEEEFTNYIILTEENVATENIENVENVETSPNKRKSYMREFACVICGEKFDNRLELKTHQDSENHKPARPFACPNCPKTFLTASHLRGHKLVHSDEKPFVCKICDRRFNTKPNLKRHVMTHTGERPHHCHICGKAFIQSVTLRDHMRVHTKETPYTCVTCNRGFKQSGELRRHMKKFHSGSTEGTTRPPRSASSQGKSKKTKSEKSFLCSDCGKSFSSNTLLAIHNRIHTGEKPFTCSVCNKSFSQVSTLRTHILVHTGEKKFDCTHCTKSFRHRVALKQHVLIHMGIRKYRCVFCTKSFTQSSQLNYHLRTHTGEKPYSCHLCGKPFALKGNLTVHVRTHTGETPYVCSICGKGFYDSSSLKKHIQRGHRNMDNLTEEEEEVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01349048;
- 90% Identity
- iTF_01349048;
- 80% Identity
- iTF_01349048;