Snig017298.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sisyra nigra
Gene Symbol
RREB1
Assembly
GCA_958496155.1
Location
OY292318.1:31006799-31023868[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0018 0.14 12.8 0.3 1 23 125 147 125 147 0.96
2 16 0.00053 0.043 14.5 0.3 1 23 163 185 163 185 0.97
3 16 0.00013 0.011 16.4 4.6 1 23 191 213 191 213 0.99
4 16 0.43 35 5.3 0.1 1 20 311 331 311 335 0.70
5 16 0.2 16 6.4 6.4 2 23 341 363 340 364 0.94
6 16 0.019 1.5 9.6 1.0 1 21 429 449 429 450 0.95
7 16 0.081 6.6 7.6 0.1 1 23 607 629 607 629 0.96
8 16 1.2e-05 0.00098 19.7 0.7 1 23 639 661 639 661 0.99
9 16 0.00089 0.072 13.8 3.1 1 23 667 690 667 690 0.97
10 16 0.00076 0.062 14.0 2.8 1 23 1149 1172 1149 1172 0.96
11 16 6.2e-05 0.0051 17.4 1.4 2 23 1431 1452 1430 1452 0.97
12 16 0.39 32 5.5 5.9 1 23 1458 1481 1458 1481 0.96
13 16 0.11 9.3 7.1 4.0 1 20 1524 1544 1524 1548 0.94
14 16 1.2 96 4.0 0.6 1 23 1616 1639 1616 1639 0.93
15 16 0.018 1.4 9.7 0.5 3 23 1694 1714 1692 1714 0.93
16 16 0.014 1.2 10.0 5.9 1 23 1720 1742 1720 1742 0.98

Sequence Information

Coding Sequence
ATGCAAGATCTGTTTGGAGGTGTGAACGCATCAACGACAATTGCATCAACCACGGCACCAACTGCGTCTTCGATCACGTCCGACTCGTCAACCATTCCAGAATCCTGTGCGAAACATTCGGGATCGTCGTCGCCTCCACAGTCGCTTGTTTCATGCCAATcagAGATGGAAATGGAAGAAACTACAACTGCGAGTAAAGAAGAATATCAAATTTCGACCAGAAGTCATCAACGCTTGATGAAACCGTCGATTATTCGACGAACACCACCATGTCGGGAACCAAGTGAAGATAAATCATCGGTTGACCACGAGGATGAAGATGTCGATTCTAATGACTCAAAACCAAGTAGTGGGGATGAGGGTAAAAAGACTTATTTATGCCCGATTTGTGATATTCAGTTAGATGATCAGCACGAGTTTACACTGCATATTCGTTCGCATAACAACGATAATAACAACGATAGTTCAAATCCAAATTTAAGCCAGTTCGAATGTCGAATTTGCTTCAAAGTCTTAAGCTCAAGTTCCAGTTTAGATCGACATGTTCTTGTTCATAGCAAAGAACGTCCATTTCGATGCCGTCTCTGTTCCGTTACTTTTACGACCAATGGAAATATGCATCGACACATGCGAAAACACAATGTAAATTCTACGAATTCGATCAATTCCTCATCGCCAAACGAATCAGATGCTGCTAGTCATAGCGATAGTAGCTCATCTTCAACGGCTGCCAGCGGCTCGACACAATCAACCCCACGAAAATCCCTTCGTCGACGTCGCTACGaacacaacaacaacaactatCCGAAAAAACGGAAAGTTGACTCTTTACTGAACGACACAGATCTCGACAACAACCAAAACACCCGAAGacgcttaaaaaaatcaatcaacaaCAACAACGAAAATGAAGACTCAGAAGGACAAAAGTACCAATGTCCTATTTGTGGACGCGAAGATTTCGCATCTCTCAACGTTTTTGAAACGCATCTGGAAGAATCACATCCACAATACCAAATCAAATGCCACCAATGCAACCTATCATTCAAAAACCATCGGGTTTTAAATCTTCACCGATTCATGGTGCATCATTCGACCGACTCAAACAACACAGGCTCAACATCTCCACCGAATCTAACTGAATCAAAGTCTCCGAAATCTGAGGGAATCATTGGATTTCGAGATTTAACTTTCGTGGATTTCTCGAGTGAAAAGTTTCCAATAATTGCAAAGACCGTATGCGAACAGGCTTTACATAAAGCCGATAAAAATGATGATTTGATCTTTGAGTGTCACAAATGTTCACGGGCTTTCCCATGCGCTAGTGCACTTGAAATCCATCAAAAATCCTGTAACAACTACAGTATCAAAGAGGAAGAAGATGATCATAAGAACTCTTCGAGCGAGGATGATTTGAAACGAGAGGACTTTTTCGCTGGACTCgatttacaaaataaatcaagtgCATCGCAAGATGCAGATTTTGATAAGCACACGCCCATTCAGTTAAGACCTTCTATTCTTACTCCACCAAATTCAAGAAAGTTACACGACTATCTAACAAAACCCCATGTTACTGACAATACAAAAGATCTCGCTGATATTCAGTCGATTATATCAGTAACATCAACTCAAAGTTTACTACAGCAACTAACTGCTCAAAAATCGGGGACTCCGTCGATGGCCACGATGAACTTACCGATTCCCGCTCAAATAACACCACCTGATTCTGAAGCTCGAATCAATGAAAATCAAAACGAAGAGGAGACTCAAGATCAGTTCGCTGCTGAGTTTCGAAAGATGAAACTACGAGGTGAGTTTCCTTGTCGTCTATGTTCGGCTGTATTTCCAAATTTGCGAGCCTTGAAAGGGCATAATAGAGCCCATTTGAGTGGAGCTGGATCTAATGGACCGTATCGTTGTAATATGTGTCCACATTCATCCGTTGATAAAGCGGCTCTGGTACGTCATATGCGTACCCATAATGGAGATCGTCCATATGAATGTTCTTTATGTAACTACGCTTTCACGACCAAAGCTAATTGTGAGAGACATTTACGCAATCGACATGGAAAAGTAACTCGCGAGGATGTGAAACGTGCCATAATCTATCATCCATCGGAAGATCCAACTAATGATGAAGCTGCCGCAAGTCTTAACAAAATGTTTAACACTACTCCTTCAGGTCGAGGCAGTGCTTCACTCTTACCAATGACCCCAACCGTTCCTGGGGAAGACATTCACAAGATTTACATGTCTGATGTAAAACGATCATTGGTCTTTCCAACTCCACCACTTTCTGGTGACATACCTCCATCAACTGGCAAACTATCCCTAACCGACATTCGATCAGTAATATCCAAACTTCCAATCCCAAATCAAACGGAAGTTCCTCTCTCATTATACAAAGACGATTCGTATTTAATCTCAAATCTAACCAAAGCAAACAATTTAAAAGACCGAATGTATCATAGTTCCGAAGAAAGTCAAACGGGATTAACAATTCCAAAGATTCAAGTTAAAAATGTCAATGAGCTAAAATCAGTTCCTGAGTACAACTCTTCAGATTCTGAAGATGAACAGTTTAATAAATCAACGCTGATGACTACTCCCTTATCACATTTCTCAAGAAATCAGGCTCAGCCACTCCCAACTGCGGCTCCAATTGATTTATCGATGGACGTTCTGGATTTAAGTAAGAAAAAACGGGATCCAACTCCGGAACCGGCATCGCCTGCACCTCCACCTTCGAGTCATGCTGACGAATCGGAAGAGGACCAACCACATGATTTCACCAAGAAAACTTTGAATGAGACAATTCAAAAAACCAGATCTCAATCACCACAACATCCCTTGCATTCCCTACCACTAAACCAACCAaatattttcgataaaactCAACAGTTGTTACTTGCTCAACAATTATTTAAGAACAATGCAATTAACTCGAACTTGTACGCAGCACAACTTCAACATTTGTACAGTAATCGTGATGGAGTACTATCGGGGCCTCCCCCTCCCCCCGGATCGACTCCACAATTTCCTTTTGGTATCAATCCGTATTTTCTCCAACCGCATCCATTTTTAACTCCTACAACATCACCACAagattttcaagaaattaaagAACGGATTCAGAAAGAGATCATTCGGGGTCTTCAAATGAGCGGCGGTGGTTTAATTATGGATCAACTCGCTTCGGAACGGTTGCAAGCGTTCCAAAAACAGTCTGAACAGATGACTGATACCAAATATAACTCTCACATGAAATCAGATGAAAGTAAATCGTTAGACTCGCTCGAGACTTTAGTGACCAACAATAAGTCTTCGTTAAAGatgaatgaaaatataatttctgcGACCCCAAATTCGGTTAAAATGGTTATTAAGAACGGAGTTCTTATGCCTAAACAGAAACAACGTCGATATCGTACGGAACGACCTTTTTCATGTGAACATTGTTCTGCCCGATTTACTCTTAGATCAAATATGGAACGCCATATTAAACAACAGCATCCACAGTTTTGGTCACAGCGGCAACGATCGAATTTGACTGTGGGTCTTCCTGGACGCAAACCTTCAATATCAGCAATTCCGCCTTCCCAATTTGAAACAAAACCACCTCCAATTTCAAATATTCTCAATAATTCGctcgaaaaaaatttaccaaatcCAATGAATATGCGACCGACTGAGAAGAAAGCACCGTTACTAATTAACGACCAGGTCAAGTACGCCATTTTGGCCCAACAGTTAAAACAATTACAAAACACCGAGAAAAAGGAAAGTTCCGTGAATGAGGATGATGATGACGAGGAAAGAAGCTCGTTGATAATCGATGAGAATTCGCAACAAAGTTCACAGTCCACCGACATGGAAAAGCTAAGAAAAACGGAAAGTCTCGAACAGAAATTGGCTGAGCTACGAATGAATAAAGAGAAGCTCCTAAAAGAAGAAACTAAAATCGAATCACGAAAAGACGAAGAAAATGCTAAGAACAACGAAGATCTCGTTCCGGTTTCTCAACTGCTTGATAACGCTGCTCAAATCCCATTTCGGGATTATTTCCGACGGGAAACCGAAGATGTGGAAACACCCACGGATGATGAGGAAGAGGAAGGTTTAGTCGCCAGTGGAAGCACGAGCGAAGGGAATGTTTCAGGGAGCGATGGAAATAAGTCTGAAAGTGATACAACGAAAAAAGGGGCGTTTAAAACAAAAGCTGAACCATCGGTTCCGTCGATGACCGGAAAGAAGAAATCAGCATATTCTCTAGCGCCGAATCGTGTTACTTGTCCGTATTGTCATCGTAAATTTCCGTGGTCGTCATCGTTACGGCGCCACATTTTGACTCATACTGGTCAAAAGCCGTTTAAATGTTTGCACTGTCCTTTACTGTTTACAACGAAATCGAATTGTGATCGTCATTTACTACGAAAACATGGGAATATGGTGAATAATAATAGTAATGGAACGTCTTTGACTGTTCCAACTAATGCGTCTCCTACATCGAATGAATCAAGCGTGAATAACGCCAATTACTTAATGAGAAATGTCCCGGAACGTCCGTATAAATGTTCGAGCTGTCCAAGTTCAACATTTTCGACATTAAGCAATTTAAAGAAGCATATGTCTTGTAAGCATAATACGAGTGGAAATGCATCATCACACAGTCGCTCACATTCACCTGATGCAGTTAAATCTGCCACTTATGACAGCCATTCTTCTGAAGATGAGTATCAGAAGAAAGACGGGTGGGAACAACAAATCAACTTTGGTAATTCGATAGAGCATAGTGTTGGTAGTTTGCCGCTTCCCGTTAGTGTCTCAGCATCTGATTTACCGTTCAAGTGTCATTTGTGTGAAGGGTCTTATGGGGATCGACAAGAAGCTTTGGATCATATCAAAGATTACCATGCGGCTGAATACGAACTTCTTTTGAGTAAGGGCGCTTTGGAAAATCAGCCTGATCCAGAACATGGACCGAATGTTCCAAATGCAGAACATAATAGCGACGAGCCCGAAGAACAGGCGAATCTTCGTGGTAAGTTTCCTGACTATGCCAATCGGAAAGTGATGTGTGCGTTTTGTATGCGACGCTTTTGGTCGGCGGAAGATCTACGCCGACACATGCGGACTCATACGGGAGAGCGTCCATTTTCTTGTGATGTGTGTCGACGTCGATTTACTCTGAAACACTCAATGTTGCGGCATCGGAAAAAACATGGAGATCTAACCGAGGAGGGTTTCAAAATCAATGCACAAGATGTGGGTAGTTTAGAGGAGCAACACGTACAACGAAAAACGCAGCAACGACGCCGTCGGTCGTCCAGTAGTAGTTTGGTTCCGACCGAAAAAGAAGAGGACGACATCGGCGATAATGGCGATGGAGATCTGATTGGAAACTTATTGGGTATCCAGGATAGTTCCATCATCGACAAAGTGCTTCGCTCATCTGCCGATGACGCTGCCAAACTTCTCGGCATGAAAAAAAATGGCGAATAG
Protein Sequence
MQDLFGGVNASTTIASTTAPTASSITSDSSTIPESCAKHSGSSSPPQSLVSCQSEMEMEETTTASKEEYQISTRSHQRLMKPSIIRRTPPCREPSEDKSSVDHEDEDVDSNDSKPSSGDEGKKTYLCPICDIQLDDQHEFTLHIRSHNNDNNNDSSNPNLSQFECRICFKVLSSSSSLDRHVLVHSKERPFRCRLCSVTFTTNGNMHRHMRKHNVNSTNSINSSSPNESDAASHSDSSSSSTAASGSTQSTPRKSLRRRRYEHNNNNYPKKRKVDSLLNDTDLDNNQNTRRRLKKSINNNNENEDSEGQKYQCPICGREDFASLNVFETHLEESHPQYQIKCHQCNLSFKNHRVLNLHRFMVHHSTDSNNTGSTSPPNLTESKSPKSEGIIGFRDLTFVDFSSEKFPIIAKTVCEQALHKADKNDDLIFECHKCSRAFPCASALEIHQKSCNNYSIKEEEDDHKNSSSEDDLKREDFFAGLDLQNKSSASQDADFDKHTPIQLRPSILTPPNSRKLHDYLTKPHVTDNTKDLADIQSIISVTSTQSLLQQLTAQKSGTPSMATMNLPIPAQITPPDSEARINENQNEEETQDQFAAEFRKMKLRGEFPCRLCSAVFPNLRALKGHNRAHLSGAGSNGPYRCNMCPHSSVDKAALVRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHGKVTREDVKRAIIYHPSEDPTNDEAAASLNKMFNTTPSGRGSASLLPMTPTVPGEDIHKIYMSDVKRSLVFPTPPLSGDIPPSTGKLSLTDIRSVISKLPIPNQTEVPLSLYKDDSYLISNLTKANNLKDRMYHSSEESQTGLTIPKIQVKNVNELKSVPEYNSSDSEDEQFNKSTLMTTPLSHFSRNQAQPLPTAAPIDLSMDVLDLSKKKRDPTPEPASPAPPPSSHADESEEDQPHDFTKKTLNETIQKTRSQSPQHPLHSLPLNQPNIFDKTQQLLLAQQLFKNNAINSNLYAAQLQHLYSNRDGVLSGPPPPPGSTPQFPFGINPYFLQPHPFLTPTTSPQDFQEIKERIQKEIIRGLQMSGGGLIMDQLASERLQAFQKQSEQMTDTKYNSHMKSDESKSLDSLETLVTNNKSSLKMNENIISATPNSVKMVIKNGVLMPKQKQRRYRTERPFSCEHCSARFTLRSNMERHIKQQHPQFWSQRQRSNLTVGLPGRKPSISAIPPSQFETKPPPISNILNNSLEKNLPNPMNMRPTEKKAPLLINDQVKYAILAQQLKQLQNTEKKESSVNEDDDDEERSSLIIDENSQQSSQSTDMEKLRKTESLEQKLAELRMNKEKLLKEETKIESRKDEENAKNNEDLVPVSQLLDNAAQIPFRDYFRRETEDVETPTDDEEEEGLVASGSTSEGNVSGSDGNKSESDTTKKGAFKTKAEPSVPSMTGKKKSAYSLAPNRVTCPYCHRKFPWSSSLRRHILTHTGQKPFKCLHCPLLFTTKSNCDRHLLRKHGNMVNNNSNGTSLTVPTNASPTSNESSVNNANYLMRNVPERPYKCSSCPSSTFSTLSNLKKHMSCKHNTSGNASSHSRSHSPDAVKSATYDSHSSEDEYQKKDGWEQQINFGNSIEHSVGSLPLPVSVSASDLPFKCHLCEGSYGDRQEALDHIKDYHAAEYELLLSKGALENQPDPEHGPNVPNAEHNSDEPEEQANLRGKFPDYANRKVMCAFCMRRFWSAEDLRRHMRTHTGERPFSCDVCRRRFTLKHSMLRHRKKHGDLTEEGFKINAQDVGSLEEQHVQRKTQQRRRRSSSSSLVPTEKEEDDIGDNGDGDLIGNLLGIQDSSIIDKVLRSSADDAAKLLGMKKNGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01349938;
90% Identity
iTF_01349938;
80% Identity
-