Basic Information

Insect: Sisyra nigra
Gene Symbol: -
Assembly: GCA_958496155.1
Location: OY292315.1:3040242-3043805[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 8.6 7e+02 1.2 0.1 6 23 220 237 218 237 0.89

2 13 1.8e-06 0.00015 22.3 1.0 1 23 243 265 243 265 0.98

3 13 0.062 5 8.0 4.5 1 23 271 293 271 293 0.98

4 13 6.7e-08 5.4e-06 26.8 0.5 1 23 299 321 299 321 0.98

5 13 0.8 65 4.5 0.6 1 22 327 348 327 351 0.90

6 13 9e-06 0.00073 20.1 0.6 3 23 420 440 419 440 0.99

7 13 7.4e-05 0.006 17.2 2.9 1 23 446 468 446 468 0.99

8 13 1.9e-06 0.00016 22.2 1.6 1 23 474 496 474 496 0.97

9 13 6.8e-06 0.00055 20.5 2.2 2 23 502 523 502 523 0.97

10 13 6.1e-07 4.9e-05 23.7 0.5 1 23 529 551 529 551 0.96

11 13 2.2e-06 0.00018 22.0 3.8 1 23 557 579 557 579 0.97

12 13 2.5e-06 0.0002 21.8 4.7 1 23 585 607 585 607 0.99

13 13 3.8 3.1e+02 2.4 0.0 2 22 624 644 623 644 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	8.6	7e+02	1.2	0.1	6	23	220	237	218	237	0.89
2	13	1.8e-06	0.00015	22.3	1.0	1	23	243	265	243	265	0.98
3	13	0.062	5	8.0	4.5	1	23	271	293	271	293	0.98
4	13	6.7e-08	5.4e-06	26.8	0.5	1	23	299	321	299	321	0.98
5	13	0.8	65	4.5	0.6	1	22	327	348	327	351	0.90
6	13	9e-06	0.00073	20.1	0.6	3	23	420	440	419	440	0.99
7	13	7.4e-05	0.006	17.2	2.9	1	23	446	468	446	468	0.99
8	13	1.9e-06	0.00016	22.2	1.6	1	23	474	496	474	496	0.97
9	13	6.8e-06	0.00055	20.5	2.2	2	23	502	523	502	523	0.97
10	13	6.1e-07	4.9e-05	23.7	0.5	1	23	529	551	529	551	0.96
11	13	2.2e-06	0.00018	22.0	3.8	1	23	557	579	557	579	0.97
12	13	2.5e-06	0.0002	21.8	4.7	1	23	585	607	585	607	0.99
13	13	3.8	3.1e+02	2.4	0.0	2	22	624	644	623	644	0.91

Sequence Information

Coding Sequence: ATGGAAGAGAAAATTAGCAAACTAAATTCGATCAAGAAAATCTGTCGCACTTGTTTGACTGAAAATGGCGATCTACGAAATATTTTCGACTCGATCGACCCAAATCTCAAAACACAAACGTCAAACATGCTAACGGCTTGCACCTCGCTTCAGacCGATAATAACGATGGTCTACCGCCAACGATATGTACGGACTGTGAAATCCGGCTTCATAACGCTTTCGATTTTCGTGAATTGGCGTTAAAATCTTATGATaccctcaaaaactatttgAGCCTTGATCAAGTTCCACCCTCGCAAGTTTCGAATGCTGACGAGTTTTTGATTGTTGAAGAAAAGGAGATTTTGATTGAAATGAAGGACGAAACACTTGAGACCAACTCAAACTATGAGCGTAGCGAAGAAGACGAGAGAAGCGAgccggaaaataaaaaaaataaaccaaaGCCGAAGACCAAGACTCGAAAGAATGAGAGAGGTGGAAGTAGGATTCGAACAGCAGCCGTCGATCCTGTTGAAGTCAATCAAGTGTTGGCGGAATCGAAAAAACGGTGCCAGGAAAAACGGGAATGCCGTCTGTGTGGCTTCATTTGTTTGAATGCTCGAGGACTTAGTCTTCATATCTCTCATATTCATAAaGAAATGAAAAATCGTTGGTGTCCCTTGTGTTATATGGAAGTCGATGATCTATTGGAGCACAAGAAAAAACATAGCCAGGAGAAGTTGTACAAATGTCCGTTTTGTGATAAGGACTTTCGAGCTCAGGGACATTTAACTGAACATATTCGAGGACATTCAGGCGAAAGACCACACAAGTGTTCCGTTTGTAAGAAAGGCTTTCTATCGGGTCGCCATCTTCGCGTGCATTTTCGAATTCACACGGGCGAAAAACCATTCGAATgtgatatttgtaataaacgATTCACACAAAAGAGTGGCCTACAAAGCCACATGGCGATTCATAACATAAAACAAACCTACAAATGTGCGGTGTGTCATGAAGAATGGGCCAAGTTAAAATGGCTGTGCCAACATATAATGCAAGCGGGACATGAACAACCACTGCCTGATGACGTTAAGGCGCAACTGAATAAGGAAGAATCTACGTTGGAAATGACAAGAAGTGTAGTGGAATGCTCGATTGATGACTCGGAGAAAACTGAGGATCCGACCAAAAAACTTAGAGACATCAAAAAGAAAGATGCTCCGAAATATGTGGCGAAAGTTGTTAAAGACGTTAAAGCAGATAATAAGCTGTGTAATGTCTGTGGAAGATCATTTCGTTTGGCGACTAAGTTGCGATTACATATGAGGATCCATACGGGGGATACTCCATATTCGTGCCAATTTTGTAATAAACATGTTAGCACACGCAGTCAGTTGGTCGTACACGAACGGACACATACGGGAGAGAAACCTCACATTTGTCATATTTGTGGACGGggctTTGCTCAATCGAGTGTATTAAACACGCACATGCGACTTCATACGGGTCGTCCCGAAGAATGTATGGTGTGTGGTCAGAGATTTTGTCGTCCAACCGAACTTCGGCTTCACATGCGAAAACATACAGGTGAAAAGCCGTATTTATGTCCCGAATGTGGTCAAGCATTCATTCAAATGAGCCATCTCAAGGAACATATAAAGACGCACAGCGACGAACGGCCGCATCCGTGTCCACATTGCTCGCGAGCTTTCAAGCAAAAGACAACGTTACGGTCGCACATTCGAATTCATACGGGCGAGAAGCCGTATCGGTGCAGCGAATGTCCGTACCGGTGTCGACAAAGTTACAGTCTGACACAGCACATGCGAACACATTCGAAACCCAATGCGGAACCCAGCGCGGAACCAAACACACGCACGCTCATGTGTTTGATTTGTATGGCTCAGTTTCCGACTGTGGCTCTTCTAAACCAACACACCAAGACAGAATGTGCTTTagttttataa
Protein Sequence: MEEKISKLNSIKKICRTCLTENGDLRNIFDSIDPNLKTQTSNMLTACTSLQTDNNDGLPPTICTDCEIRLHNAFDFRELALKSYDTLKNYLSLDQVPPSQVSNADEFLIVEEKEILIEMKDETLETNSNYERSEEDERSEPENKKNKPKPKTKTRKNERGGSRIRTAAVDPVEVNQVLAESKKRCQEKRECRLCGFICLNARGLSLHISHIHKEMKNRWCPLCYMEVDDLLEHKKKHSQEKLYKCPFCDKDFRAQGHLTEHIRGHSGERPHKCSVCKKGFLSGRHLRVHFRIHTGEKPFECDICNKRFTQKSGLQSHMAIHNIKQTYKCAVCHEEWAKLKWLCQHIMQAGHEQPLPDDVKAQLNKEESTLEMTRSVVECSIDDSEKTEDPTKKLRDIKKKDAPKYVAKVVKDVKADNKLCNVCGRSFRLATKLRLHMRIHTGDTPYSCQFCNKHVSTRSQLVVHERTHTGEKPHICHICGRGFAQSSVLNTHMRLHTGRPEECMVCGQRFCRPTELRLHMRKHTGEKPYLCPECGQAFIQMSHLKEHIKTHSDERPHPCPHCSRAFKQKTTLRSHIRIHTGEKPYRCSECPYRCRQSYSLTQHMRTHSKPNAEPSAEPNTRTLMCLICMAQFPTVALLNQHTKTECALVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01349066;
90% Identity: -
80% Identity: -