Basic Information

Insect: Sisyra nigra
Gene Symbol: -
Assembly: GCA_958496155.1
Location: OY292315.1:3033637-3037042[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 4.7 3.8e+02 2.1 0.2 2 23 188 210 188 210 0.91

2 13 4.1 3.3e+02 2.3 0.1 6 23 218 235 216 235 0.91

3 13 7.4e-07 6e-05 23.5 0.8 1 23 241 263 241 263 0.98

4 13 0.00032 0.026 15.2 2.7 1 23 269 292 269 292 0.95

5 13 2.4e-06 0.00019 21.9 0.4 1 23 298 320 298 320 0.98

6 13 0.18 15 6.5 1.2 1 22 326 347 326 350 0.91

7 13 3.6e-06 0.00029 21.3 0.7 3 23 419 439 418 439 0.99

8 13 6.4e-05 0.0052 17.4 2.5 1 23 445 467 445 467 0.99

9 13 1.7e-05 0.0014 19.2 3.1 1 23 473 495 473 495 0.97

10 13 7.1e-05 0.0057 17.3 1.5 2 23 501 522 501 522 0.97

11 13 3e-05 0.0024 18.4 0.7 1 23 528 550 528 550 0.95

12 13 1.7e-07 1.4e-05 25.5 2.8 1 23 556 578 556 578 0.99

13 13 8.1e-06 0.00066 20.2 4.4 1 23 583 605 583 605 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	4.7	3.8e+02	2.1	0.2	2	23	188	210	188	210	0.91
2	13	4.1	3.3e+02	2.3	0.1	6	23	218	235	216	235	0.91
3	13	7.4e-07	6e-05	23.5	0.8	1	23	241	263	241	263	0.98
4	13	0.00032	0.026	15.2	2.7	1	23	269	292	269	292	0.95
5	13	2.4e-06	0.00019	21.9	0.4	1	23	298	320	298	320	0.98
6	13	0.18	15	6.5	1.2	1	22	326	347	326	350	0.91
7	13	3.6e-06	0.00029	21.3	0.7	3	23	419	439	418	439	0.99
8	13	6.4e-05	0.0052	17.4	2.5	1	23	445	467	445	467	0.99
9	13	1.7e-05	0.0014	19.2	3.1	1	23	473	495	473	495	0.97
10	13	7.1e-05	0.0057	17.3	1.5	2	23	501	522	501	522	0.97
11	13	3e-05	0.0024	18.4	0.7	1	23	528	550	528	550	0.95
12	13	1.7e-07	1.4e-05	25.5	2.8	1	23	556	578	556	578	0.99
13	13	8.1e-06	0.00066	20.2	4.4	1	23	583	605	583	605	0.98

Sequence Information

Coding Sequence: ATGGAACAGAAATTCAACAAACTAAATTCGATCAAGAAAATCTGTCGCACTTGTTTGACTGAAAATGGCGATCTACGAAATATTTTCGACTTGATCGACCCAAATCTCAAAACACAAACGTCAAACATGCTAACGGCTTGCACCTCACTTCAGaccgACAATAACGATGGTCTACCGCCAACGATATGTTCTGAGTGTGAAACCCGGCTTCATAACGCTTTCGATTTTCGTGAATTGGCGTTAAAATCTTATGTTaccctcaaaaactatttgAGCCTCGATAAAGCTCCAACCTCGCAAGTTTCGAATGTTGACGAGTTTATTGAAGTAGATGAGATTAAGATTgaaataaaagaagaattaCTTGAGACTATCTCTAATTATGAACGTAGCGAAGAAGACGAGAGAAGCGAgccggaaaataaaaaaattcaaccaatGCCGAAGACCAAAGCTCTACACGATTGGAGAAGTAAAAGCAGGACTCGAACAGCAGCCGTCGATCCTGTTGAAGTCAATCAGGTGTTGGCGAAATCGAAGAAACGGTGCCAGGAAAAACGGGAATGCCGTTTATGTGGCTTCAGTAGTTTGAATGCTCGAGGATTTAATCTTCATATCTCTCGTATTCATAaAGAAATGAAAAATCGTTGGTGTCCCTTGTGTTATATGGAAGTTGATGACTTACTGGAGCACAAGAAAACACATAGCCAGGAGAAGTTGTACAAATGTCCGTTTTGTGGCAAGGACTTTCGAGCTCAGGGACATTTAACTGAACATATTCGAGGACATACAGGCGAAAAACCACACAAGTGTTCCGTTTGTAAGAAAGGCTTTATAACGCGTCGCAATCTTCGCGGACATTTTCTTCGGATTCACACGAGCGAAAAACCATTCGAATGTGATATTTGCAATAAACGATTCGCAGAAAAGGGTGGCCTACAACACCACATGGCGATTCATAACATAAAACAAACCTACAAATGTGCGGTGTGTCATGAGGAATGGCCCAGGTTAAAATCGTTGTGCCAACATATAATGCAATCGGGACATGAACAACCACTGCCTGATGACGTTAAGGCGCTACTTAATAAAGAAGAATCTACGTTGGAAATGACAAGAAGTGTAGTGGAATGCTCGATTGATGACTCGGAGAAAACTGAAGATCCGACCAAAAAACTTAGAGACATCAAAAAGGAAGATATACCGAAATATGTGGAGAAGGTTGTTAAAGATGTTGAAGCAGATAATAAGCTTTGCAATGTCTGTGGAAAATCATTTCGTTTGGCGACTAAGTTGCGATTACATATGAGGATCCATACGGGGGATACTCCATATTCGTgccaattttgtaaaaaatttcttagaaCACAAAGTCAATTGATCGAGCACGAACGGACACATACGGGAGAGAAGCCTCACATTTGTCATATTTGTGGACGGcgaTTTGCTCAATTGAGTGTATTTAACACGCACATGCGACTTCATACGGGTCGTCCCGAAGAATGTATGGAGTGTGCTCAGAGATTTTGTCGTCCAGCCGAACTTCGACGTCACATGCTAAAACATACAGgtGAAAAACCGTTTTTATGTCCCAAATGTGGTCAAGGATTCATTCAAATGAGCCATCTCAAGGGACATTTAGAGACACACAGCGACGAACGGGCGTATCAGTGTCCACATTGCTCGCGAGCTTTCAAGCAAAAGCAATCGTTACGGTCGCACATTCGAATTCATTCGGACGAAAAGTTTATGTGCAGCGAATGTCCGTACCGGTGTCGACGAAGAGACTCTCTGACACAGCACATGCGAAAACATTCGAAACCCAATGCTTAA
Protein Sequence: MEQKFNKLNSIKKICRTCLTENGDLRNIFDLIDPNLKTQTSNMLTACTSLQTDNNDGLPPTICSECETRLHNAFDFRELALKSYVTLKNYLSLDKAPTSQVSNVDEFIEVDEIKIEIKEELLETISNYERSEEDERSEPENKKIQPMPKTKALHDWRSKSRTRTAAVDPVEVNQVLAKSKKRCQEKRECRLCGFSSLNARGFNLHISRIHKEMKNRWCPLCYMEVDDLLEHKKTHSQEKLYKCPFCGKDFRAQGHLTEHIRGHTGEKPHKCSVCKKGFITRRNLRGHFLRIHTSEKPFECDICNKRFAEKGGLQHHMAIHNIKQTYKCAVCHEEWPRLKSLCQHIMQSGHEQPLPDDVKALLNKEESTLEMTRSVVECSIDDSEKTEDPTKKLRDIKKEDIPKYVEKVVKDVEADNKLCNVCGKSFRLATKLRLHMRIHTGDTPYSCQFCKKFLRTQSQLIEHERTHTGEKPHICHICGRRFAQLSVFNTHMRLHTGRPEECMECAQRFCRPAELRRHMLKHTGEKPFLCPKCGQGFIQMSHLKGHLETHSDERAYQCPHCSRAFKQKQSLRSHIRIHSDEKFMCSECPYRCRRRDSLTQHMRKHSKPNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01349069;
90% Identity: -
80% Identity: -