Snig001602.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sisyra nigra
Gene Symbol
Hr39
Assembly
GCA_958496155.1
Location
OY292313.1:26239922-26249260[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 4 2.1e+04 -6.8 11.2 76 167 83 205 29 219 0.44
2 4 0.11 5.6e+02 -0.1 7.5 45 136 241 335 229 369 0.76
3 4 1.7e-07 0.00088 19.0 0.1 1 19 453 471 453 477 0.93
4 4 5.7e-71 3e-67 228.1 3.6 141 408 501 780 482 780 0.82

Sequence Information

Coding Sequence
ATGGCATCAGCCGGCGGCGGGGCGGCAGAGCTTCGCCCAAACAACGTCTCCGTAACAGCTATCAACGTCGACAATACAAACTATTACAGTAACAGCAACAATAGCAATAGCAGCAACAATGCCGTGACAGTCAACATTACGGACAATCATCAACCTACGTCAGACGATTTAAATAACGTTACATTGCAACAGCACTCGTCAGCATTGAACTTTCATTCATCTGCACAGAGTGATTCCGATTCTGAAGTTGCTCAAATCGATTTTAAAGCTCATCCAGTTAACTTACGAAATAAAAATGGCGAATCAAAAgtTGGAGAAGTTGTGCGTCCAATGTCTTGGGAGGGCGAATTATCCGACAGCGAAAGTGCCACTATGTGCATCGACGAAGATGCTTCTAGCTCACAAAACGCAATCATTCCGGAAAATTTATCCATCATATGTAACCAAACGAACTTACACCAGACTAACCAAACACAATCTTCATCGTCATCGCAACCATCAATTGGAGCAACAACATCAAATACCGCAACGTCGACACCTCCTGGTGCTGTGCGCTTAAAACAAAGTGCTTCTTCGGCCGTTGTCAACAATTATTCGTTACATAGCACACCGTCACATTCACCATTATTAAATCAAAGACCATTAGGGCATCGACAGCTAAACGTTCCACCAACTCCGAGTCCTGACTCAGCTGTTCATTCTGGATACagtGTTTTTAGTTCTCCGAGCCAATCTCCATTGACACAGCGACACGTAACATTAACACCGTCACTATCCCGTAACAACAGCGATGCTTCGCATTCAAGTTGTTACAGCTATTCCAGTGTTTCAGTTTCCGTTTCGCCGACACAACAATTCTCTCCAACACATTCCCCAATACAAGGCAGACATCTGCAACATAATAGTCCATTGCATCATAATAATTTATACCGAAACATATCAGACGTAGAAACACAACATATTAATAACGCATCATCATCGTACTACGGATCATCGTCTAATTGTCGGCAGTTAAATAATAGTGATATTAGTAGTGATTTATTAATCGATCCAGCCAATGCTGACGATAACGatgataaaacaaatatttcacaAACTTCTCTCCCGACGGGTCAAAGCATATCAAGGCAGCAATTAATTAATAGCCCCTGTCCGATTTGTGGCGATAAAATATCAGGTTTTCACTATGGTATATTCAGTTGTGAATCATGCAAAGGCTTTTTCAAAAGAACTGTTCAAAATCGTAAAAATTATGTGTGTTTACGAGGGGCTTTATGCCCTGTTACAgttataacaagaaaaaaatgccCAGCGTGTCGATTTGATAAATGTCTACAATGTGGAATGAAACTGGaagCTATTCGAGAAGATCGTACTCGAGGAGGTCGTTCTACGTATCAGTGTTCATACAGTGTTCCACCTTCGATAACTGCCTTTTCTGACTATCAATCATCTCCGAATACAACTGGAATTAAATTAGAACCATCTGATAATACCAATTCCTCACTCACAGCGTCACCTTCATCTTACAGTTCACATAAGCGATTATCAGTTCCTCCATTATTACAAgAAATAATGGATGTTGAACATTTATGGCATTACAACGAACTTGAATTGACTAAATTAAGCAATGAAGCCAATTCTCTTGGCAATAAGAGTAATAGCAGTAGTACATCACCTAATATCAACAATTTAACATCAAACCCCTTAATCGCTAGTACAAACTTAAACACAGACGTTGAAACAAGTCCCGATTTCTTAGCAAACCTATGCAGTATAGCTGATCATCGTctttataaaattgttaaatggtGTAAAAGTCttccattatttaaaaatatttcgatTGATGATCAAATTTGTTTGTTGATCAATTCATGGTGtgaattacttttattttcttgttgTTTTCGATCAATGAGTACTCCAGGAGAAATAAGAGTTTCGCTTGGAAAAAGTATTAATTTAAGTCAAGCTCGAGAAATGGGATCACAGGCTTGTATAGAGCGTATGTTGAATTTCACGGAAAACCTACGACGGCTTCGAGTTGATCGTTACGAATATGTTGCAATGAAAGTTATTGTACTGTTAACATCAGATGCTTCGGAGTTGCGAGAAGCTGAAAAAGTTCGCGCGTCACAAGAAAAAGCTTTACAAGCTTTGCAAGCGTATACTTTAGCACATTATCCAGATAGTCCAGCTAAGTTTGGTGAACTATTATTACGAATTCCAGATTTGCAACGTACTTGCCAGgTGGGAAAAGAAATGTTCTCAATCAAGTCTAAAGAAGGTGAAGGTTCtagtttcaatttattgatgGAGTTGCTTCGAGGAGATCATTGA
Protein Sequence
MASAGGGAAELRPNNVSVTAINVDNTNYYSNSNNSNSSNNAVTVNITDNHQPTSDDLNNVTLQQHSSALNFHSSAQSDSDSEVAQIDFKAHPVNLRNKNGESKVGEVVRPMSWEGELSDSESATMCIDEDASSSQNAIIPENLSIICNQTNLHQTNQTQSSSSSQPSIGATTSNTATSTPPGAVRLKQSASSAVVNNYSLHSTPSHSPLLNQRPLGHRQLNVPPTPSPDSAVHSGYSVFSSPSQSPLTQRHVTLTPSLSRNNSDASHSSCYSYSSVSVSVSPTQQFSPTHSPIQGRHLQHNSPLHHNNLYRNISDVETQHINNASSSYYGSSSNCRQLNNSDISSDLLIDPANADDNDDKTNISQTSLPTGQSISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGALCPVTVITRKKCPACRFDKCLQCGMKLEAIREDRTRGGRSTYQCSYSVPPSITAFSDYQSSPNTTGIKLEPSDNTNSSLTASPSSYSSHKRLSVPPLLQEIMDVEHLWHYNELELTKLSNEANSLGNKSNSSSTSPNINNLTSNPLIASTNLNTDVETSPDFLANLCSIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSINLSQAREMGSQACIERMLNFTENLRRLRVDRYEYVAMKVIVLLTSDASELREAEKVRASQEKALQALQAYTLAHYPDSPAKFGELLLRIPDLQRTCQVGKEMFSIKSKEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01348948;
90% Identity
iTF_01348948;
80% Identity
iTF_01348948;