Basic Information

Transcription Factor Domain

TF Family: GCFC
Domain: GCFC domain
PFAM: PF07842
TF Group: Unclassified Structure
Description: This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 3.4e-11 2.4e-07 30.9 1.4 234 275 11 52 3 52 0.91

2 2 8.4e-05 0.58 9.9 0.6 237 272 59 94 53 97 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	3.4e-11	2.4e-07	30.9	1.4	234	275	11	52	3	52	0.91
2	2	8.4e-05	0.58	9.9	0.6	237	272	59	94	53	97	0.85

Coding Sequence: ATGTTTGGAACAAACTTACAGTACCAATATGTTAATGTTGCTTATTTTTCTCTAGATGCTTGGAATTGGGTGATGGATTGGGCTGATATGCTAAGTGCACAAGCAATGGCGTTACTGTTAGACAAATGCTTCTTACAACGATGGCTACAAACTTTATCACTTTGGTTGAATCAACAACCAAACTACGTGGAAATCACCGAGTGGTTTATCGGTTGGAAGGGAATGTTATCTGAACAAATCTTACAACAACCCCTTGTAAAAGAATGTTTCCGAAAAGCCCTGGAAATGATGAACCGAGCTGTGAAGCATCCAACTGGTCAACAACCGGGAGCTCTTGAGACAGTGTCATATTTAACAAATCTTGAAACAAACGCTCCGGCTCCACCGATGATTAGTTCCAGTTCTGTGAATTCCCAGCTCAATACCGAGTCTATAGTTCGCACACAAATGACTTCTCAGACGTTTAGTTTTAAGGATGTGGTGGCTAAAAGTTGTGAGGATCGAGGAATTTTGTTCGTTCCGATCCCGAACAGGTATCGAGAAGCAAAACAAGTGTATCGTATTGGAAGTGGTTCGACTCAATGTTATATTGATAGAAACGTTATATTTGCAACGACCAATGGAACGAATTGGGCTCCAACTAATTTAAATCATTTGTTAGATatagtataa
Protein Sequence: MFGTNLQYQYVNVAYFSLDAWNWVMDWADMLSAQAMALLLDKCFLQRWLQTLSLWLNQQPNYVEITEWFIGWKGMLSEQILQQPLVKECFRKALEMMNRAVKHPTGQQPGALETVSYLTNLETNAPAPPMISSSSVNSQLNTESIVRTQMTSQTFSFKDVVAKSCEDRGILFVPIPNRYREAKQVYRIGSGSTQCYIDRNVIFATTNGTNWAPTNLNHLLDIV

Sequence clustering based on sequence similarity using MMseqs2