Snig008075.1
Basic Information
- Insect
- Sisyra nigra
- Gene Symbol
- bab1
- Assembly
- GCA_958496155.1
- Location
- OY292315.1:17551489-17561129[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.7e-12 7.8e-09 35.3 0.0 2 39 445 483 444 487 0.90 2 4 6.3e-13 7.3e-10 38.6 0.1 1 39 498 536 498 539 0.95 3 4 3e-18 3.5e-15 55.7 0.0 1 45 553 598 553 598 0.97 4 4 2.9e-19 3.3e-16 58.9 0.0 1 42 605 647 605 649 0.97
Sequence Information
- Coding Sequence
- ATGATCATAGTTCTCATCACGAGTTCAAATCCACGGGAAATCATCAATAAAACACTATTCGAAGATTGTCCCGAAGTTTGCGGGTTGAAAGACACGAATGAGGATATAATGGCCGATGATGAACTGCGACATACGGCGACAGACGATGAATTTTCTACCAAACACCAAAATAATACAAACTCCCAACATCAGCATTATTGTTTACGATGGAATAACTATCAAACCAATATGACTTCAGTCTTCCATCAACTATTAGAAAACGAAGCCTTTGTAGACGTAACTTTAGCATGCAAAGATTTCTCACTAAAAGCTCATaaggtGGTCTTATCGGCTTGTTCgacttattttcaaaaattgttaatggaAAACCCGTGCAAACATCCAACGATAATAATGCCTCAGGATGTTGATTTTGTcgacttaaaatttataattgagtTTGTTTATCGAGGCGAGATTGACGTGTCTGAGGAAGAATTGCAGTCATTGTTACGAACGGCCgatcatttgaaaataaaaggtTTGTGCGAAGTGCCAACAAATGGAACGATTCCATTGAACGATCATAAAATTGAACTATCGCCGTCGCCTATTATTTCACGCCGGTCCTACACGAAATTGCAGCGTGTTTGTAGTTCCAACGCGAAAAAACGACGATATTTGCTGAACTCGTTGACGAATGAGGAAGATGCTTCGGAAAAGAAGATGCCTGCCGTGTTGATGCTCGAGTCGAAAAGTACACCGGAAACGAACGAGGCGCAAATTTGGTCGCCGCTTTCAGGCGAACACCGAGCAATTGATAATTGTAGTGGCCAAACCGTGTCGGGTTTGGGGCATGGAATGTTACCGACACCAACATTGTTTCCTGGTCATGTGGAACTACCACCTGAGCCTCCGGCACCAACAGCAACACCTGTACCTTGTCCGCCACCTGATTTCATACCTAACTCACAAGGCTTACAGTTAACACACTGCTCATCTCCACCAACTCACCATGATCTCAGTGataCAACTATGTCAAATCCTGACGAAAACAATGGCTCGAACCATAACTTCACACAATTCGACGATGTTAAAGTCAAATTTGAAACTTTACGCTCGGTCGATTCGGCAGGAGAAATGGATGCCTGCAGCCGTTTATCTCAAGAAAGCTCCGAGTCTATGCATCACCAATCAATGATGATAACTCCACATCTCCTAGACATGAATTCAGATTCAAACCATCATTCTAATAAAATGAACGGTCATTCATCTCAAACCTATCATATGCTTCAGCATAATAGTCTGGGTTCGAATGTTAGTGGACATGGTGGTGGACCGAAAACATGGAGTCAGGAAGACATGGAATTGGCATTGGATGCATTGAGGAACCATAATATGAGCTTAACTAAGGCTTCAGCCACGTATGGAATACCATCAACGACTCTCTGGCAACGAGCACATCGACTCGGTATTGATACACCAAAAAAAGAGGGTCCAACAAAATCGTGGACTGAAGATAGTTTAAATTCGGCGTTGGAGGCATTGAGAACCGGAACAATATCAGCGAATAAAGCCAGCAAAGCTTATGGTATACCCAGTAGTACACTTTATAAAATCGCAAGACGAGAAGGTATACGATTAGCAGCTCCTTTCAACGCTGCTCCCACGACTTGGTCTCCAGAGGACCTAGAACGTGCTTTAGAATCAATTAGAACTGGCCAAACTTCGGTGCAACGAGCATCGACAGAATTCGGAATTCCTACAGGAACGTTATACGGCCGATGTAAACGAGAAGGAATTGAATTATCGCGAAGTAATCCCACACCTTGGTCAGAGGACGCGATGGGTGAAGCCTTGGAGGCGGTAAGAGTTGGACAAATGTCCATAAATCAAGCAGCCATTCATTACAATCTTCCCTATTCTTCGTTATATGGTCGTTTTAAACGTGGCAAATATGAAAACGATTCGATAACAGGACCCGGTGGAagtattttagttgaaaataatcTGTCGTCAGACAATACGTCGACAAGTGGAGCGATGCTCCCGACGTCAGAGCGGCAAATGCTGCAACAATATAACAACCAACAAAATCAACATCATCACAGTCAGCAACAATCACCGCATCAATCGCCACATACTGATCTCACAGGAAATACTAATTATATTAGTTGA
- Protein Sequence
- MIIVLITSSNPREIINKTLFEDCPEVCGLKDTNEDIMADDELRHTATDDEFSTKHQNNTNSQHQHYCLRWNNYQTNMTSVFHQLLENEAFVDVTLACKDFSLKAHKVVLSACSTYFQKLLMENPCKHPTIIMPQDVDFVDLKFIIEFVYRGEIDVSEEELQSLLRTADHLKIKGLCEVPTNGTIPLNDHKIELSPSPIISRRSYTKLQRVCSSNAKKRRYLLNSLTNEEDASEKKMPAVLMLESKSTPETNEAQIWSPLSGEHRAIDNCSGQTVSGLGHGMLPTPTLFPGHVELPPEPPAPTATPVPCPPPDFIPNSQGLQLTHCSSPPTHHDLSDTTMSNPDENNGSNHNFTQFDDVKVKFETLRSVDSAGEMDACSRLSQESSESMHHQSMMITPHLLDMNSDSNHHSNKMNGHSSQTYHMLQHNSLGSNVSGHGGGPKTWSQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEDSLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPEDLERALESIRTGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYENDSITGPGGSILVENNLSSDNTSTSGAMLPTSERQMLQQYNNQQNQHHHSQQQSPHQSPHTDLTGNTNYIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01349549;
- 90% Identity
- iTF_01349549;
- 80% Identity
- iTF_01348983;