Basic Information

Transcription Factor Domain

TF Family: E2F
Domain: E2F_TDP domain
PFAM: PF02319
TF Group: Helix-turn-helix
Description: This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 8.8e-30 6.1e-26 90.1 0.2 2 65 10 74 9 74 0.98

2 2 0.27 1.9e+03 -1.1 0.1 14 34 86 106 78 134 0.54

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	8.8e-30	6.1e-26	90.1	0.2	2	65	10	74	9	74	0.98
2	2	0.27	1.9e+03	-1.1	0.1	14	34	86	106	78	134	0.54

Coding Sequence: atgacCGACAGCCAAATAAGTAGATTTGAAAAATCACTAGGACTGTTAACGACAAAATTCGTCTCACTGTTACAAAAGGCCAAGGACGGTGTTTTGGACCTGAAAGTCGCCGCAGATTTACTTGCCGTGAGACAAAAACGACGTATCTATGACATTACAAACGTCCTCGAAGGAATCGGACTGATCGAAAAGAAGAGCAAAAACAGCATACAATGGCGGGGCGCGGGACCCAGTTGCAATACCGAGGAGTTGGCCGAAAAGTTGTAccatttaaaaaaggaaatatacAAGTTGGAGGAGCACGAGAAGATGCTGGACCAGCACAAAGTTTGGATTCAGCAAAGTATCAAAAATATAACCGAGGATGTGAGCAATAAGCGGCTGTTTTATACGACTGAAATTGACTTGAACGAAGCCTTTCCCGACTCGGCAATATTCGCGATTCAAGCTCCGCTCGGCACCAACATTGAGATCTCAAGCACCCAGtttagtccaaaaaaatttaatgttcgaGTCAAGTCTTCGACGAAGCCTATTCATGCGAGTGTCTTAAACGAGGAACCAACACCATATCCAAAACGACCACGAAGTCCTTCGACTGAACAAAATtgCCAAACAATTACATCCGAATACGACGAGTGTTCACCagcaaaaaaaccaaaacaaagcCTGCATAGTACGAATGAATCAGACAACGATGTCGTTGACAATCAACTGGTCGAAACGGCTGTTATTATTAGTGACATTCCTGAACAATCAGAGCCCGTCGATGAAGACGATGAATGTCTCTCGTTTTGTTtaggTGGCAAACTTATACCCCTAAGTCCACCAGCTGGCGAAAAAGATTACACTTACAATTTGTATGCAAGTGAAGGGGTTTGTGATCTGTTCGATATATCTGTCGTTAGGTGa
Protein Sequence: MTDSQISRFEKSLGLLTTKFVSLLQKAKDGVLDLKVAADLLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWRGAGPSCNTEELAEKLYHLKKEIYKLEEHEKMLDQHKVWIQQSIKNITEDVSNKRLFYTTEIDLNEAFPDSAIFAIQAPLGTNIEISSTQFSPKKFNVRVKSSTKPIHASVLNEEPTPYPKRPRSPSTEQNCQTITSEYDECSPAKKPKQSLHSTNESDNDVVDNQLVETAVIISDIPEQSEPVDEDDECLSFCLGGKLIPLSPPAGEKDYTYNLYASEGVCDLFDISVVR

Sequence clustering based on sequence similarity using MMseqs2