Basic Information

Insect: Siphlonurus alternatus
Gene Symbol: -
Assembly: GCA_949825025.1
Location: OX463781.1:10138827-10146642[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0004 0.052 14.6 4.1 1 23 263 285 263 285 0.97

2 11 1.2e-05 0.0016 19.4 1.5 1 23 291 313 291 313 0.98

3 11 0.00013 0.017 16.1 2.4 1 23 319 342 319 342 0.96

4 11 0.11 14 7.0 6.1 1 21 348 368 348 370 0.94

5 11 0.00012 0.016 16.2 1.9 1 23 376 398 376 398 0.99

6 11 2.5e-05 0.0033 18.4 1.2 1 23 404 426 404 426 0.98

7 11 0.00032 0.041 15.0 1.4 1 23 434 457 434 457 0.97

8 11 2.5e-05 0.0032 18.4 2.3 2 23 464 485 463 485 0.97

9 11 9.4e-05 0.012 16.6 0.6 1 23 491 513 491 513 0.98

10 11 1.3e-06 0.00016 22.5 2.5 1 23 519 542 519 542 0.97

11 11 2.1e-08 2.7e-06 28.1 0.8 1 23 556 578 556 578 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0004	0.052	14.6	4.1	1	23	263	285	263	285	0.97
2	11	1.2e-05	0.0016	19.4	1.5	1	23	291	313	291	313	0.98
3	11	0.00013	0.017	16.1	2.4	1	23	319	342	319	342	0.96
4	11	0.11	14	7.0	6.1	1	21	348	368	348	370	0.94
5	11	0.00012	0.016	16.2	1.9	1	23	376	398	376	398	0.99
6	11	2.5e-05	0.0033	18.4	1.2	1	23	404	426	404	426	0.98
7	11	0.00032	0.041	15.0	1.4	1	23	434	457	434	457	0.97
8	11	2.5e-05	0.0032	18.4	2.3	2	23	464	485	463	485	0.97
9	11	9.4e-05	0.012	16.6	0.6	1	23	491	513	491	513	0.98
10	11	1.3e-06	0.00016	22.5	2.5	1	23	519	542	519	542	0.97
11	11	2.1e-08	2.7e-06	28.1	0.8	1	23	556	578	556	578	0.97

Sequence Information

Coding Sequence: ATGAGTGGGGTCAAGAAAAAAGAGGAGGACGAGGATGCAGGGACCGATGCTGGTGGTGTTAAGATGGAGGGACAGGACGGAGAAACCATCACAGACATACAAAACTACTTGGAGACCTTCAATAAGGAAATACAAGATGGGTCGCAGGTGGCAGGCCAGGCTGCGCCAGGCGAGGGCACGTACTTCGTGGACCAGTCCGGCCAGTACTACTATCAGGCCAGCGGGGACCAGCAGCCCGTCATGACTGTTGTCACAGGTAAGCTCGACTTGGAGTGTGGCTCAGGGCAGGCTGAGAAAGACTTCGGAGTCAGGAAGAACCAGCAACCTCGGTGTGCTTATCACCTCTCTGAGGAGGGTGAGGAAGGTTCCGGCGGTGAGGGGATCGCCATTTCCATCCCTGCAGGCATTGCTGGGGATGGCAGCACAGACGGCAGTGGGGGTGAAACCACCTTCATTGCCATGCAAACACAAGATGGAGGGGAGGACGCTGGCATCACCACTCTCGAATCATCTGAAGACGTTATCCTAAATGCTGGTGATGCTTACCAGACAGTCACGATAGTACCGAGCGAGGCAGGCTCTGGTGAGGTGAGCTACGTACTGATAGTACAACAGCCTGATGACAAAGACGGAGACAAGGGCGAGGGAGATGGTGAGGACCAGGACCTTACTGTTTACGACTTCGACGAGGGGGAGGAGGGCATGCCTGTGGAGTCTGGGGATGAGGATGACAAGACTAAAATCATCAAGATTATGCCAAAGAAATCTCAAACTGTAACCCAAGCTCACAtgtgtaattattgtaattacacaaGTCCAAAAAGGTACCTGCTGTCTCGCCACATGAAGTCCCACTCGGAGGAACGTCCCCACAAGTGCAGTGTGTGTGAGCGAGGCTTCAAGACCCTTGCCTCCTTGCAGAACCATGTTAACACCCACACTGGCACCAAACCTCACCGCTGCAAATTCTGTGACAGCGCCTTCACAACCTCAGGAGAGTTGGTACGGCATGTGCGTTACAAGCACACCCACGAGAAGCCTCACCATTGCACGGAGTGCGAGTACTCCAGCGTGGAGCTGAGCAAGCTGAAGCGCCACATGAGGTGCCACACAGGCGAGCGGCCGTACCAGTGTCCTCACTGCACATATGCCAGCCCGGACACTTTCAAGCTGAAGCGCCACTTAAGGATACACACTGGCGAGAAACCATACGAGTGTGATGTTTGTCACGCCCGCTTCACGCAGTCCAACAGTCTCAAGGCTCACAAGCTGATTCACACAGCCGGTGACAAGCCAATTTTCCAGTGCGAACTGTGCCCCACAACATGCGGCAGAAAAACGGACCTGCGCATACACGTGCAGAAGCTGCACACGTCTGACCGGCCCCTCAAGTGCAAGCGCTGTGGCAAGTCGTTCCCTGACCGCTACACTTACAAGGTGCACAATAAGACGCACGAGGGGGAGAAGTGCTTCAAGTGTGACCTGTGTCCATACGCGTCCATCTCCCAGCGCCACCTCGAGTCACACATGTTGATTCACACCGACCAGAAGCCCTACCAATGCGACCAGTGTGATCAGTCGTTCCGCCAGAAGCAGCTGCTCAAGCGTCACCAGAACCTATACCACAACCCAAACTACGTGCCGCCCCAGCCTCGTGAGAAGACCCATGAGTGTCCCGAGTGTGGACGTGCCTTCCGCCACAAGGGGAACCTCATCCGCCACATGGCAATCCACGACCCAGAGTCTGCAGCACAGGAGAAGGCTCTTGCACTCAAGATAGGCCGCCAGAAGAAAATACAGATCATTGACGGACAGCAGGTGGAAGTGATGCCGGGCGAGTCAGACGAAGACGAAGATGAGGACGAAGATGAAGATGAGGATGACGACGAAGGCATGATGGCAGTTGAGGGTCAGGACGGACAGCAGTACGTCGTGCTGGAGGTCATACAGCTGCAGGACGGAGAGGGCGGTGAGGGCCAGACTGCGGTGGCTGTTGTCCAAGACGAGTCTGCCATGGAGCAGGACGCAGAAGATGCCATCGCACGTCAGGAGGCAGAAGAAGAGGAGCAACGCATCCACACCATGAAAACAAGGAGACTCTCAAGACGAGACGCCATTGCCATCAAGAAAAGGCTAGAGACTCAAAAGGACATGCAGAACTGCTTTGGTTTTGATGATGATGAGGACGAGGAGGAAAATGATGGAGAGGTGGGTGATGTCGATGCCAAAAATGCCATCAAGCTCCTTGAGTCAATCAACGAGTAA
Protein Sequence: MSGVKKKEEDEDAGTDAGGVKMEGQDGETITDIQNYLETFNKEIQDGSQVAGQAAPGEGTYFVDQSGQYYYQASGDQQPVMTVVTGKLDLECGSGQAEKDFGVRKNQQPRCAYHLSEEGEEGSGGEGIAISIPAGIAGDGSTDGSGGETTFIAMQTQDGGEDAGITTLESSEDVILNAGDAYQTVTIVPSEAGSGEVSYVLIVQQPDDKDGDKGEGDGEDQDLTVYDFDEGEEGMPVESGDEDDKTKIIKIMPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHRCKFCDSAFTTSGELVRHVRYKHTHEKPHHCTECEYSSVELSKLKRHMRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDVCHARFTQSNSLKAHKLIHTAGDKPIFQCELCPTTCGRKTDLRIHVQKLHTSDRPLKCKRCGKSFPDRYTYKVHNKTHEGEKCFKCDLCPYASISQRHLESHMLIHTDQKPYQCDQCDQSFRQKQLLKRHQNLYHNPNYVPPQPREKTHECPECGRAFRHKGNLIRHMAIHDPESAAQEKALALKIGRQKKIQIIDGQQVEVMPGESDEDEDEDEDEDEDDDEGMMAVEGQDGQQYVVLEVIQLQDGEGGEGQTAVAVVQDESAMEQDAEDAIARQEAEEEEQRIHTMKTRRLSRRDAIAIKKRLETQKDMQNCFGFDDDEDEEENDGEVGDVDAKNAIKLLESINE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00630895;
90% Identity: -
80% Identity: -