Salt006388.1
Basic Information
- Insect
- Siphlonurus alternatus
- Gene Symbol
- -
- Assembly
- GCA_949825025.1
- Location
- OX463779.1:24642081-24669850[+]
Transcription Factor Domain
- TF Family
- AF-4
- Domain
- AF-4 domain
- PFAM
- PF05110
- TF Group
- Unclassified Structure
- Description
- This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental disabilities [1]. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.00068 19 5.0 0.1 3 26 108 131 106 155 0.68 2 3 2.4e-07 0.0067 16.4 0.1 43 134 254 342 246 358 0.60 3 3 1e-08 0.00029 20.9 0.7 328 387 409 464 389 481 0.75
Sequence Information
- Coding Sequence
- ATGCCGCGGGAAACAAGCGAGATTTGCCGGTGTTGCTGGTCGCCCGCGTGGTTTAGGGGTTGCCTCATTGAACAGAAGGATCATAGGGGGGAGGCACAGTCAGCTCCTTATATCGAGCAGCAGTATAACAGAAAGAGAAGGGCCGGCTGTGACCACTTCTTGAGTCCAGTGTTGAGGCCAGCCAGCAGTATAGGGAATCAATATAGAACCCACCCGACTGGCAAGCGACGACAGAGCGTCAACACAATCGAGACAACCGGAGTGCCCAGCAAGTgtcgcttgcttgcttgcttgcttgcttatTTACCTCCCCTCGACAACGTGGAGCGCGACCGTCTCCGCGAGCGGGAGCGGCAGGCGCGCGCGCAGATGTCCTCGCAGGCAGCCGAGCGGGAGGACTCGCTGCCCGCAGCCTCGGCCGCCATGGGGGGTGCTCCGCTCTTTGGAACCCCCGTCCGGGTCGCGCTGGTCACGTGGTCAATCGCTTCTTCGATCGTGTCCGCCTCGTCTCGTCACCGTCTTCTTGCTGCTGTTTCCTCCTCGACGGCGGCACGTCTGCGCGTTGCGTCACAATCCGACGGCGAACCAACTTGTGGCACGGCCGCGGTTGAGTCAGTGGCACCAAGCGCGCGTGTGGCCTGCCCGCGCGTCATACTTCACCGCCGGCATTTCCGCTGGTCCGTTCTCACGCCCGCCGTTGCAGCCGCTCTTAGCTGGACATCTTGGGTTCGAGCAGGACCCCCTGTGACGCCGTCCTCGACGGACCGCGTGACGCAGCAGATCCAAAGCAAGCTGGGCAACTACGAGCATGTGCGCCACTTGCTGGATGAGCCAAAGCGTCTGATCGGCGTGGATCAGCACGCTGCCGCTCTCGCCGCAGCAGCAGCGGCCGCAGCAGCACGCGAGGGAGGCGGCTCACGAGGAGGGAGCCAACCTTCGGAGTTCAAGAAACCCTCGTCAGCCTCTGCCGCGTCGTCAACGGTGCACAATGGACGTACGCACCACCACCCCAACTCGCGTTACTCCAAACCAGACTCTGGCAAGCAGCCTTATGCGCCACCTCCAAGACTAACCGCCGCCGGAGGCCTCTTGCCAACTCCAGCTGGATCTTCGTCACAACATCCCCAACCGCCAGCCCGCTCAAATGGTGCCCTCACCAAACCACCCGCGGGTCCACACCTGCTGCCTTCGCAGAACAATCGCATCAGCCAAGTCGCAAAGACGTTACCTAAACTCGAGGACCCTTCGGTCCATGGGAGTCAGCATGAGGAGCTGGACACCATCTTCAAGGAGATGACGGGCGCGTTGCCACCCCCGCTTACTGGTATCATCACGCCGCGCAAGGAGCACCCCGACTCACGCTTCAGCTTCGAACACCCCCCGCGCAACAATACGTTGACCAAGGCCAGAGAGCAGCCCCCAGCGCCCGCCCCCGTGGTGCCAATACCACCACCGCCTTCAGAGCCCAAGCCGCAGCAACTTCTCTCTGCTGCTGCCGTAGCTCCTCCGACTGGCAAGCTCGCTCGTTCGCGCGCTCGGCACGGCTCGGGCGGGCGATCGCGCTGCCGTCGCCGCCTCTCCTCCCGCTCTCCGCGGCGTCAGTCGCTCATGGCGTGCTCGCCCTGA
- Protein Sequence
- MPRETSEICRCCWSPAWFRGCLIEQKDHRGEAQSAPYIEQQYNRKRRAGCDHFLSPVLRPASSIGNQYRTHPTGKRRQSVNTIETTGVPSKCRLLACLLAYLPPLDNVERDRLRERERQARAQMSSQAAEREDSLPAASAAMGGAPLFGTPVRVALVTWSIASSIVSASSRHRLLAAVSSSTAARLRVASQSDGEPTCGTAAVESVAPSARVACPRVILHRRHFRWSVLTPAVAAALSWTSWVRAGPPVTPSSTDRVTQQIQSKLGNYEHVRHLLDEPKRLIGVDQHAAALAAAAAAAAAREGGGSRGGSQPSEFKKPSSASAASSTVHNGRTHHHPNSRYSKPDSGKQPYAPPPRLTAAGGLLPTPAGSSSQHPQPPARSNGALTKPPAGPHLLPSQNNRISQVAKTLPKLEDPSVHGSQHEELDTIFKEMTGALPPPLTGIITPRKEHPDSRFSFEHPPRNNTLTKAREQPPAPAPVVPIPPPPSEPKPQQLLSAAAVAPPTGKLARSRARHGSGGRSRCRRRLSSRSPRRQSLMACSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -